Query= MSMg01no512_g05.b1 MSMg01no512_g05.b1 CHROMAT_FILE:
MSMg01no512_g05.b1 PHD_FILE: MSMg01no512_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:31 2005
(609 letters)
>mm_chr4_110269204_110270212
Length = 1009
Score = 1029 bits (532), Expect = 0.0
Identities = 555/564 (98%), Gaps = 6/564 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttttc--tcctgttcatcagttaaaaactacacagagtgaaatttccaacaag 61
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaattcttttcaat--tgttcatcagttaaaaactacacagagtgaaatttccaacaag 504
Query: 62 gagttcttcattgtaaagctcatcttaattttcctcataaataagcagttgttattttat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gagttcttcattgtaaagctcatcttaattttcctcataaataagcagttgttattttat 444
Query: 122 cattcactgtgctgattttgaagcccaatgaatgatgaaatatgacttttcttaggctaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cattcactgtgctgattttgaagcccaatgaatgatgaaatatgacttttcttaggctaa 384
Query: 182 ctctacaatcttaatgaaaatacaaaactac-tattcttttacataaattaatacattat 240
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 383 ctctacaatcttaatgaaaatacaaaactacat-ttcttttacataaattaatacattat 325
Query: 241 atgggttttttgtttcattttgcctcttatcttactatgatttgaataataggctatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgggttttttgtttcattttgcctcttatcttactatgatttgaataataggctatcat 265
Query: 301 aagaggcttatgatatttatttggtattttgctattatgatatttttccttataaagaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagaggcttatgatatttatttggtattttgctattatgatatttttccttataaagaac 205
Query: 361 agctttcagcttctcttcatttactttgatgttggctaccggtttgctgtatattgcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agctttcagcttctcttcatttactttgatgttggctaccggtttgctgtatattgcttt 145
Query: 421 tattgtgtttaggtatgggccttgaattcctgatctttccaagacttttatcatggatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 144 tattgtgtttaggtatgggccttgaattcctgatctttccaagacttttatcatgaatgg 85
Query: 481 gtgttggattttgtcaaatgctttctcagcatctaatgagacgatcatgtggtttttgtc 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 84 gtgttggattttgtcaaatgctttctcagcatctaatgagatgatcatgtggtttttgtc 25
Query: 541 tttgagtttgtttatacactggat 564
|||||||||||||||| |||||||
Sbjct: 24 tttgagtttgtttatatactggat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_g05.g1 MSMg01no512_g05.g1 CHROMAT_FILE:
MSMg01no512_g05.g1 PHD_FILE: MSMg01no512_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:31 2005
(583 letters)
>mm_chr4_110095175_110096158
Length = 984
Score = 1098 bits (568), Expect = 0.0
Identities = 580/584 (99%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 1 acctcattccaccacaggattaaaaattattaaaaaattaattaccatttgatagatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctcattccaccacaggattaaaaattattaaaaaattaattaccatttgatagatttc 260
Query: 61 cagtcatttccataattttgtgtcatatccttttctcctttcccatatatgacttttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtcatttccataattttgtgtcatatccttttctcctttcccatatatgacttttttt 320
Query: 121 ccattttattgtcattttaatgacttggacaagttatcttgcatggactattaatacatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattttattgtcattttaatgacttggacaagttatcttgcatggactattaatacatt 380
Query: 181 atttggggcttttctattatgtggttagccctaaactttacaatattcttgattaaatcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 atttggggcttttctattatgtggttagccctaaactttacaatattcttgattaaattc 440
Query: 241 ttttataaactaaagacaataaaagaacattttcaagacttcatactctgactgaaaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttataaactaaagacaataaaagaacattttcaagacttcatactctgactgaaaaac 500
Query: 301 ttctaggcattaatatgaacaaacattcctaattaa-gacaaatgcattgaatgtttatg 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ttctaggcattaatatgaacaaacattcctaattaatgacaaatgcattgaatgtttatg 560
Query: 360 atagtttataaaatcttgaaagtttagattatagattatataattttagtttattcagta 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagtttataaaatcttgaaagtttagattatagattatataattttagtttattcagta 620
Query: 420 cctttggtatttcatgtattttgttatactaaataaatgtttggtgctgtgttgtctgat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctttggtatttcatgtattttgttatactaaataaatgtttggtgctgtgttgtctgat 680
Query: 480 ttaagatacttttccaatttatttatcatttattcattactttgaattttagtagaataa 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 ttaagatacttttccaatttatttatcatttatgcattactttgaattttagtagaataa 740
Query: 540 ggccttggtttattgttattgagacatttctagtatgctatttg 583
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggccttggtttattgttattgagacatttctagtatgctatttg 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
