Query= MSMg01no512_g16.b1 MSMg01no512_g16.b1 CHROMAT_FILE:
MSMg01no512_g16.b1 PHD_FILE: MSMg01no512_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:33 2005
(551 letters)
>mm_chr4_11722451_11723401
Length = 951
Score = 1029 bits (532), Expect = 0.0
Identities = 544/548 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttcttatactgctcagtggtctagaacattgttatcaaaactccttccatctt 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ggaattcttcttagactgctcagtggtctagaacattgttatcaaaactccttccatctt 692
Query: 64 gatcaagccagaactgctgtctggggatcccctagacttcgaagcttcctttccattttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gatcaagccagaactgctgtctggggatcccctagacttcgaagcttcctttccattttt 632
Query: 124 tcttaagggcattctctttaagatggtcactgaattcctcttgacacctagttctcagag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcttaagggcattctctttaagatggtcactgaattcctcttgacacctagttctcagag 572
Query: 184 gaccaaagacaatgcgatgtctccgaatctgcacctctagctcttgagaaaacatctggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaccaaagacaatgcgatgtctccgaatctgcacctctagctcttgagaaaacatctggc 512
Query: 244 ttcctcacagtcacaaagatagcagagaaagccactggcatgggaagggcctcacaaatc 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 511 ttcctcacagtcacaaagatagcagagaaagctactggcatgggaagggcctcacaaatc 452
Query: 304 cttagtaaaaggaaaacagacgtgtaaactcaccacatcgggtacagtgcttacctacgt 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttagtaaaaggaaaacagacatgtaaactcaccacatcgggtacagtgcttacctacgt 392
Query: 364 cagacacctcgatacttaagttgtactgaggactgtcttgcttcttcaaggactgtttac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cagacacctcgatacttaagttgtactgaggactgtcttgcttcttcaaggactgtttac 332
Query: 424 ttaactgaacctttccctcatattcgccaatgagaaaaagtccatctgagggaactttgg 483
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 331 ttaactgaacctttccctcatattcaccaatgagaaaaagtccatctgagggaactttgg 272
Query: 484 gtgtttggtctacaagcttgtatttcaaaatactgttgatgttgttagcttcgtccatat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtgtttggtctacaagcttgtatttcaaaatactgttgatgttgttagcttcgtccatat 212
Query: 544 catgggcc 551
||||||||
Sbjct: 211 catgggcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_g16.g1 MSMg01no512_g16.g1 CHROMAT_FILE:
MSMg01no512_g16.g1 PHD_FILE: MSMg01no512_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:33 2005
(470 letters)
>mm_chr4_11557727_11558596
Length = 870
Score = 843 bits (436), Expect = 0.0
Identities = 462/472 (97%), Gaps = 4/472 (0%)
Strand = Plus / Plus
Query: 1 atgatacgaaatttccaaataatcaatacaaaatattgtgaaaaaaaatgagcaaccctt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatatgaaatttccaaataatcaatacaaaatattgtgaaaaaaaatgagcaaccctt 260
Query: 61 ataaaacatgatataaataatattgaaacagtaacacctaatcaccaactgattttcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaacatgatataaataatattgaaacagtaacacctaatcaccaactgattttcttg 320
Query: 121 taagagcaacatacttttaacaagcgtttataataatgaatggtttgctatttgattgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagagcaacatacttttaacaagcgtttataataatgaatggtttgctatttgattgtg 380
Query: 181 atagtttcaggagagttctagtaagacttttttttcttaaaaattattaaaggatttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtttcaggagagttctagtaagacttttttttcttaaaaattattaaaggatttcca 440
Query: 241 gctgtcagataacatagaaaacaaaacagacgatgtttattccataagtagtaaaaaaat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtcagataacatagaaaacaaaacagacgatgtttattccataagtagtaaaaaaac 500
Query: 301 gaaatgcctgttttatttacattacttatgcttgaagacatgccccgagactcctctaac 360
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaacgcatgttttatttacattacttatgcttgaagacatgccccgagactcctctaac 560
Query: 361 agaggccgtgtctgctgctgcatccc--tcaggcagcagcaggaactgcctcatggctgc 418
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 561 agaggccgtgtctgctgctg--tccccctcaggcagcagcaggaactgcctcatggctgc 618
Query: 419 attgttgggggcatccagatgtggagggttcatatggtcaggcaatgaagtc 470
||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 attgttgagggcatctagatgtggagggttcatatggtcaggcaatgaagtc 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
