Query= MSMg01no512_i20.b1 MSMg01no512_i20.b1 CHROMAT_FILE:
MSMg01no512_i20.b1 PHD_FILE: MSMg01no512_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:45 2005
(573 letters)
>mm_chr4_66994771_66995744
Length = 974
Score = 857 bits (443), Expect = 0.0
Identities = 515/539 (95%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcagtctttac-aaacattagaggaaagtgcatcttctttctggatttttttt 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaattcttcagtctttacaaaacattagaggaaagtgcatcttctttctggatttttttt 654
Query: 64 ctctatcttagaaacacatatttgcacacaaaaatcacatgaccattcacatgtacacag 123
|| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 653 ctgtatcttcgaaacacatatttgcacacaaaaaacacaaaaccattcacatgtacacag 594
Query: 124 acacatttacaaaattattggttttgtcttatatattcatattttacaaaatcccaggac 183
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 593 acacgtttacaaaattattggttttgtcttatatcttcatattttacaaaatcccaggac 534
Query: 184 cttatgcatgtagtaaaggggactaacttgcagaccctcaagtgcccttgtgatatacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cttatgcatgtagtaaaggggactaacttgcagaccctcaagtgcccttgtgatatacac 474
Query: 244 tggcatagatgttattaaagatctactgtctagtatttgaggagagtcaatctcaagttt 303
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 473 tggcatagatgttaataaagatctgctgtctagtatttgaggagagtcaatctcaagttt 414
Query: 304 ggcacttcaattgttctataattcagattaagtgcttcaccccttaaggtgaactgattt 363
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 413 ggcacttgaattgttcaataattcagattaagtgcttcaccccttaaggtgaactgagtt 354
Query: 364 tgtatttttaactgaaacctcaaaagaatgcactgatgatgtaagaacgagcagtagcac 423
|||||||| ||||| |||| ||||||||||||||||||| ||||||| |||||||| |||
Sbjct: 353 tgtattttcaactggaaccacaaaagaatgcactgatgacgtaagaatgagcagtaacac 294
Query: 424 gaggcactattgaacggatcaccatgtgccttactctgactttcccagaagtgggttcga 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 293 gaggcactattgaatggatcaccatgtgccttactctgactttcccagaagtgggtttga 234
Query: 484 gatagattctttatgagtgatataccagaaaaaactaaaactaaaaaaaaaaaa-aaac 541
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 233 gatagattctttatgagtgatataccagaaaaaactaaaactaaaacaaacaaacaaac 175
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space: 542732
Effective search space used: 542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_i20.g1 MSMg01no512_i20.g1 CHROMAT_FILE:
MSMg01no512_i20.g1 PHD_FILE: MSMg01no512_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:45 2005
(559 letters)
>mm_chr4_66809710_66810668
Length = 959
Score = 1073 bits (555), Expect = 0.0
Identities = 558/559 (99%)
Strand = Plus / Plus
Query: 1 cttccatcgccagatgaaaaatggaaattggaagccaagaagaggttttaaggttttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttccatcgccagatgaaaaatggaaattggaagccaagaagaggttttgaggttttctg 260
Query: 61 gcaggatgactcttcagatataaaggcttgtagcttttacgggaggaagtacacaaccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggatgactcttcagatataaaggcttgtagcttttacgggaggaagtacacaaccta 320
Query: 121 gagaaatgatctttattaaccagggtactgagtttttaaatccaggtacattatcactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaatgatctttattaaccagggtactgagtttttaaatccaggtacattatcactgt 380
Query: 181 gttttaaccaaacgttatcatatttatgtttcatgtatgtcatctaagagagataagtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttaaccaaacgttatcatatttatgtttcatgtatgtcatctaagagagataagtgc 440
Query: 241 ctcaggaaataatttttgaacatggaaatcatgaattggttttggctaaatacataatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaggaaataatttttgaacatggaaatcatgaattggttttggctaaatacataatta 500
Query: 301 taacctgtggaacacactgaggttataacagatatcagaatttaaatatttagactaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacctgtggaacacactgaggttataacagatatcagaatttaaatatttagactaata 560
Query: 361 ataatgggtataaactaaggaaacccactaattagccaattaaagaagttgaattaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataatgggtataaactaaggaaacccactaattagccaattaaagaagttgaattaactt 620
Query: 421 tttgatcctatgttctctgaaaagagaagtaactgatatccacatagcagagtttttgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgatcctatgttctctgaaaagagaagtaactgatatccacatagcagagtttttgta 680
Query: 481 agaattgaaaaaggatagaaataagaatatcctgacaggaccctgatatagcagtctcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaattgaaaaaggatagaaataagaatatcctgacaggaccctgatatagcagtctcct 740
Query: 541 gtgaggctatgccagtgcc 559
|||||||||||||||||||
Sbjct: 741 gtgaggctatgccagtgcc 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
