BAC Information

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BAC

Clone NameMSMg01-512K01
Chromosome4 (Build37)
Map Location 49,215,123 - 49,215,658
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512K01.T7 (MSMg01no512_k01.b1)MSMg01-512K01.TJ (MSMg01no512_k01.g1)
ACCAG585543AG585544
length731733
length of high quality
(start - end)
246 (63 - 308)632 (72 - 703)
definitionCHROMAT_FILE: MSMg01no512_k01.b1 PHD_FILE: MSMg01no512_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:51 2005CHROMAT_FILE: MSMg01no512_k01.g1 PHD_FILE: MSMg01no512_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXAATCCAAAGAGGATCCGCGGAATTCCT
GAACTACTCAAAACTTTTATCATGAATGGGTGTTGAATCTTGTCAAATGC
TTTTTCTGTATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGT
TTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGC
ATTCCTGGAATAAAACCTACTTGGTCAGGATTGATGATTGCTCTAATGTG
TTCTTGGATTCGGTTAGCAAGATTTTTATTGAGTATTTTTGCATCGATAT
TCATAAGATATATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGT
GGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTATAGT
ACTTTCTACTTCTATTTTGTGGAATAGTTTGTGCATAACTGGAATTAGAT
TTTCTTTGAAGGTCTGATTGAACTTTGCACTAAACCTGTCTGGTCCTGGG
CTTTTTTTGGCTGGTAGAGTATTAATAACTGCTTCTATTTCTTTAGTTGA
TATGTTACTGTTTAGATTGGTCAACTTGATCCTGACTCAACTTTGGTACC
CGGCATCTGTCCACAATTTTGACCTTTTCATCCAGGTTTTTCAGTTTTGT
TGAGTATAACTTTTGTTGAAGGATCTGATGGTGTTTTGGATTTCTTTACG
ATCTGCCGTTACGTCTCCCTTTCCTCTCTGA
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTCACAAGAAAACCTTTAGACTTAGGA
ATAGTACAACCAGGGTGGTGCACTATCTCCATGCTAAACATGACAAAACA
TTCACAAAAGAACTGAAGAAGACACCCACAAAGGAGAAGACATCCCATGT
TAACAGATTCAAAGAACTAACATAGTTAAAAGGACCAGACGAGGTGGGGC
ATGGTGGTACGTGATTTTAATCCCAGCACTTGGAAGGCAGAAGCTGGTGG
ATCTCTTTGAGGTTGAGGCCAGCCTGATCTACAAAGCAAGTTCCAAGATA
GTGTCTCAAAAATAAAAATCAAAACAAGGAAGCAAACAACAAAACCCACC
AAATTTTCTAGACTATGAAAAATAATCCAGAGTTAATCCAATTGCTAACA
AAATTTCAAAGGTATTTTCCATTTTCTTTTTAAAAAGGCAATCTTAAATA
ATACTTCATGATGGCATTCTTATCTGTTGATTATGGTTTTTTACTGAAGC
CTGGGATGCTATAAGGTTCAGAGTTGTATTAAGTCCAGTGTCTTATCATA
TCTCTTCTGATCCTGCTTCAGTGAATGGAGGAAGGACAGCCATACTGTCT
TATGAAAGGCAAATGCAGTTTCTCTGGCGGAAGAACAAAGTCCAGGCTTC
CCATTAGACTCCATTAAACCCCAGCAGCATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_k01.g1 MSMg01no512_k01.g1 CHROMAT_FILE:
MSMg01no512_k01.g1 PHD_FILE: MSMg01no512_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:51 2005
         (632 letters)



>mm_chr4_49214626_49215658
          Length = 1033

 Score =  890 bits (460), Expect = 0.0
 Identities = 517/536 (96%), Gaps = 1/536 (0%)
 Strand = Plus / Minus

                                                                        
Query: 98   aagacacccacaaaggagaagacatcccatgttaacagattcaaagaactaacatagtta 157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 aagacacccacaaaggagaagacatcccatgttaacagattcaaagaactaacatagtta 974

                                                                        
Query: 158  aaaggaccagacgaggtggggcatggtggtacgtgattttaatcccagcacttggaaggc 217
            |||||||||||| |||||||||||||||||||  || |||||||||||||||||||||||
Sbjct: 973  aaaggaccagacaaggtggggcatggtggtacaagactttaatcccagcacttggaaggc 914

                                                                        
Query: 218  agaagctggtggatctctttgaggttgaggccagcctgatctacaaagcaagttccaaga 277
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  agaggctggtggatctctttgaggttgaggccagcctgatctacaaagcaagttccaaga 854

                                                                        
Query: 278  tagtgtctcaaaaataaaaatcaaaacaaggaagcaaacaacaaaacccaccaaattttc 337
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 853  tagtgtctcaaaaataaaaatcaaaacaaggaagcaaacgacaaaacccaccagattttc 794

                                                                        
Query: 338  tagactatgaaaaataatccagagttaatccaattgctaacaaaatttcaaaggtatttt 397
             |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 793  cagactacgaaaaataatccagagttaatccaattgctaacaacatttcaaaggtatttt 734

                                                                        
Query: 398  ccattttctttttaaaaaggcaatcttaaataatacttcatgatggcattcttatctgtt 457
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733  ctattttctttttaaaaaggcaatcttaaataatacttcatgatggcattcttatctgtt 674

                                                                        
Query: 458  gattatggtttttt-actgaagcctgggatgctataaggttcagagttgtattaagtcca 516
            |||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 673  gattgtggtttttttactgaagtctgggatgttataaggttcagagttgtattaagtcca 614

                                                                        
Query: 517  gtgtcttatcatatctcttctgatcctgcttcagtgaatggaggaaggacagccatactg 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613  gtgtcttatcatatctcttctgatcctgcttcagtgaatggaggaaggacagccatactg 554

                                                                    
Query: 577  tcttatgaaaggcaaatgcagtttctctggcggaagaacaaagtccaggcttccca 632
            ||||||||||||||||  |||||||||||| || ||||||||||||||||||||||
Sbjct: 553  tcttatgaaaggcaaacacagtttctctgggggcagaacaaagtccaggcttccca 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space:   636306
Effective search space used:   636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)