BAC Information

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BAC

Clone NameMSMg01-512O23
Chromosome4 (Build37)
Map Location 36,544,422 - 36,732,067
singlet/doubletdoublet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512O23.T7 (MSMg01no512_o23.b1)MSMg01-512O23.TJ (MSMg01no512_o23.g1)
ACCAG585779AG585780
length768776
length of high quality
(start - end)		569 (38 - 606)491 (67 - 557)
definitionCHROMAT_FILE: MSMg01no512_o23.b1 PHD_FILE: MSMg01no512_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:16 2005CHROMAT_FILE: MSMg01no512_o23.g1 PHD_FILE: MSMg01no512_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,544,422 - 36,544,986)(36,731,577 - 36,732,067)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
ACTTTAAAAGAAAATATTTTACATTCTTTGTCCCAGGCAATAGGTACAAA
TATAAGTCCTTAACTGTATGATTTTTAGGAGAAAATGAACATTCTCCACT
GTTTATAGTTTTCTACAGCTTTCAAAAGTCATTAGAGATTATTAAAACTG
GTTTTAACAAAAGATATATAAAAATGTGGGGTTTTTAGACAAAAGCATTG
ATATCAATAAGGGACAGGATAGCAAAATACCCACATTGCTTCTATCCTTC
CAATTACTGCTCTACACTGAATGATTTGAGTTCCACTGTGCTCTTCCATT
GTTTTCTATGCTGAAAAGCTCATTTTATGCAGGCCAGGCCTGCAGGCATG
AGCTCCATGTAGAAATTTTCTTTTTAAAATTATTCTGTATTATTGACATG
ACAACCTCCCCCCACTCCCTGGCCCTGTATTGAGAATAGAAAAAATGAGT
GACTAATTGGTTGGATAGACTAGGAGAAATAATTCAACAGTAATAAGATT
GAGAGTACCCATCAGAAGTAAGTTTAAATTCAAAATACAATCAGCAAAAT
GCTTAGAATTGCCCTCGACTACCTAGCTATTCTTAATAAATAGTTGGTGC
TACTTGCCACAAATAAGAGATGCTGAACAGAGAAAACAAGAATCTTTCAG
CACAGATCACATTGCAATCATGCATTTTCAGACATTTAAGAGCATAATAT
TTGTGAAATGTAGAATTG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGAACCAATACAATGGAAAACACAGCTTTCCCA
GTGGATTGTCTTGGAAAGCACCTAGGTAGGGGTAGAAATGATATGAGAAT
AGAAGAATAGGGGTTTTAGTTTTTAATTATGATGTAAATTTAAAGTGGTT
TCCTTTATGATGCAGTTTTGATGGGTTCCAAACTTGTACTCTGACATTTG
GTTCACTATTCTCATGTGTCATCCAGGTTTCACAATGCTATTCTGTGATT
TTCATTGGCTATAGTTTTTTCCTGTCCAAATATTTTAACACAGATTAGAA
GTCAAACTGCTAAGCTAGAATCAGCCTCTGCTAATAAAGGAGAGGTGAGT
GTGGATAAGGTGGTTCTAAAAATTGTAATAACATCTTCTTCCAACAAAGA
AATTACAAATGACCCATAGAAATTCTCCCTAGAATTCTATGCATACAATA
AAACACCACTATGCCAATAATTTTTGATCACTTACAATTCAGTGTTTTTC
CCAATAATTGAAATTTANGGCCATTTTAAAAGATGATTCCATTCTATGTG
TATTCTAAAAATTATAANGAAGGAAGGCATNGATGAATGCTATCACTCTG
TAAGGGGAGGTCTTGTTCATTTGTGCCCTAGAAATGAGAAACAGAATGAG
GGCCACCGGTATAACAAGTGACTGTGACCGTGACTGCCAGTATGTTGCAC
ACGGAGGATCTCGTTCTAGAATGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_o23.b1 MSMg01no512_o23.b1 CHROMAT_FILE:
MSMg01no512_o23.b1 PHD_FILE: MSMg01no512_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:16 2005
         (569 letters)



>mm_chr4_36544218_36545186
          Length = 969

 Score = 1054 bits (545), Expect = 0.0
 Identities = 560/565 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtactttaaaagaaaatattttacattctttgtcccaggcaataggtacaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtactttaaaagaaaatattttacattctttgtcccaggcaataggtacaaat 264

                                                                       
Query: 65  ataagtccttaactgtatgatttttaggagaaaatgaacattctccactgtttatagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataagtccttaactgtatgatttttaggagaaaatgaacattctccactgtttatagttt 324

                                                                       
Query: 125 tctacagctttcaaaagtcattagagattattaaaactggttttaacaaaagatatataa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 tctacagctttcaaaagtcattagagattattaaaactggttttaacaaaagatatatga 384

                                                                       
Query: 185 aaatgtggggtttttagacaaaagcattgatatcaataagggacaggatagcaaaatacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 aaatgtggggtttttagacaaaagcattgatatcaataagggacaggatagcagaatacc 444

                                                                       
Query: 245 cacattgcttctatccttccaattactgctctacactgaatgatttgagttccactgtgc 304
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 445 cacattgcttctatccttccaactactgctctacactgaatcatttgagttccactgtgc 504

                                                                       
Query: 305 tcttccattgttttctatgctgaaaagctcattttatgcaggccaggcctgcaggcatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttccattgttttctatgctgaaaagctcattttatgcaggccaggcctgcaggcatga 564

                                                                       
Query: 365 gctccatgtagaaattttctttttaaaattattctgtattattgacatgacaacctcccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctccatgtagaaattttctttttaaaattattctgtattattgacatgacaacctcccc 624

                                                                       
Query: 425 ccactccctggccctgtattgagaatagaaaaaatgagtgactaattggttggatagact 484
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 ccactccctggccctgtattgagaatagaagaaatgagtgactaattggttggatagact 684

                                                                       
Query: 485 aggagaaataattcaacagtaataagattgagagtacccatcagaagtaagtttaaattc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggagaaataattcaacagtaataagattgagagtacccatcagaagtaagtttaaattc 744

                                    
Query: 545 aaaatacaatcagcaaaatgcttag 569
           |||||||||||||||||||||||||
Sbjct: 745 aaaatacaatcagcaaaatgcttag 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_o23.g1 MSMg01no512_o23.g1 CHROMAT_FILE:
MSMg01no512_o23.g1 PHD_FILE: MSMg01no512_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:16 2005
         (491 letters)



>mm_chr4_36731377_36732267
          Length = 891

 Score =  919 bits (475), Expect = 0.0
 Identities = 487/491 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaccaatacaatggaaaacacagctttcccagtggattgtcttggaaagcacctagg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 691 aggaaccaatacaatggaaaacacagctttcccaatggattgtcttggaaagcacctagg 632

                                                                       
Query: 61  taggggtagaaatgatatgagaatagaagaataggggttttagtttttaattatgatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 taggggtagaaatgatatgagaatagaagaataggggttttagtttttaattatgatgta 572

                                                                       
Query: 121 aatttaaagtggtttcctttatgatgcagttttgatgggttccaaacttgtactctgaca 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 571 aatttaaagtggtttcctttatgatgcagttttgatgggttccgaacttgtactctgaca 512

                                                                       
Query: 181 tttggttcactattctcatgtgtcatccaggtttcacaatgctattctgtgattttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttggttcactattctcatgtgtcatccaggtttcacaatgctattctgtgattttcatt 452

                                                                       
Query: 241 ggctatagttttttcctgtccaaatattttaacacagattagaagtcaaactgctaagct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 451 ggctatagttttttcctgtccaaatattttaacacagattagaagtcaaactgctaggct 392

                                                                       
Query: 301 agaatcagcctctgctaataaaggagaggtgagtgtggataaggtggttctaaaaattgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agaatcagcctctgctaataaaggagaggtgagtgtggataaggtggttctaaaaattgt 332

                                                                       
Query: 361 aataacatcttcttccaacaaagaaattacaaatgacccatagaaattctccctagaatt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 331 aataacatcttcttccaacaaagaaattacaaatgacccatagaaattctccttagaatt 272

                                                                       
Query: 421 ctatgcatacaataaaacaccactatgccaataatttttgatcacttacaattcagtgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctatgcatacaataaaacaccactatgccaataatttttgatcacttacaattcagtgtt 212

                      
Query: 481 tttcccaataa 491
           |||||||||||
Sbjct: 211 tttcccaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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