BAC Information

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BAC

Clone NameMSMg01-514P17
Chromosome4 (Build37)
Map Location 65,075,287 - 65,075,988
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa
Downstream geneTrim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514P17.T7 (MSMg01no514_p17.b1)MSMg01-514P17.TJ (MSMg01no514_p17.g1)
ACCAG587334AG587335
length1,718761
length of high quality
(start - end)		---697 (65 - 761)
definitionCHROMAT_FILE: MSMg01no514_p17.b1 PHD_FILE: MSMg01no514_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:05 2005CHROMAT_FILE: MSMg01no514_p17.g1 PHD_FILE: MSMg01no514_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCGAGACGCGCTCGCTAGCTGGTGTCGCGCCTTCACCCCCGCCCTCCAC
TAGTAGATAGTTCGTGGCGTAGTAGCTTACTCATGACGGTGTTATATATC
TTCCGTCCCTTACATAGACTGTGGTTACATATATCACTCGCTGTCGCGTG
CGCGCTACGCTCGTATTTATGATACACTCCTGACGTTAGCAATTCTGCGC
TCTACCCTATCGCGCTACTCCACTGTATTTCTCTCTTCTGCTCCGGCCGC
ACGCTCGCGCTCCGTGCCTACAGACGCACGGCTACTGACGGNCACTCACC
AGCTGCTAGTGTGCGCATACCCTCACACGACGCGCCTCCTCTCGTACTTA
GCGATAGTGCTCTGCAGGCCATGCACGATAGCATCACTACTATAGAGTCG
TATCTGCGTACCTTACTCATCGTCGCCACAGCCGCGCTGGCTGGTGCCGT
TATGTCTATCTCCTCGATATTCTGCGTCATTGTGATTACCACTCACGTTG
TACCGTAGCGACTGCGCGACGCCGCCGGGCGCCATCGCGTGATGATGACG
ATAGTCGACCAGCACGACGCTCTCATAGTGATGAGTGATATCTGTCTATC
TCATCATNCACTACTGCATGTACGATAGCGGCTGACGGCGTCGGCTTGTG
CGACGATAGCTACCTGCGCCTACTGTTTCTCTCTCCTTTCTTAGTCTTCT
ACCTCCGATTGCTAATCCTATCGACCGTGTATATATCCGTCTCTATATCT
GTATCTCTCTTATCTACACTACGCATGCGTCATGATCTGCGCACTATCTA
TGGTGTCTGGTGTGGTACTGATGCGCTACGATATTGTCGCGTCGTATCCG
TGCCGCGACTGTCGGAACGTGGAATTCATATAATATAGATATATCGCACA
CATATACTCGATGCCTGCGCTGGGTCCACCGTCTATATAAGAANACGGAC
GCCACGTAACAGCGCGTGAAGATAATGATATGTGAGACGAGTCGCGCGCG
CGATATACACGCCGCGCGACCGACGTCGCCGCCGTAGAGAGTATATGANC
GCGACGTGAACGCAGATNCCTATATCTGTCACCATCATAGCTGCACATCG
TGTCGACGTCTATCATACACGACATCTAGTGAGACTATCGTAAAACTGAA
TTGTGGCGCATGTTGCCAGCAACATCTATATATGTACACGTACGCGCTGT
TNTATTAGATTGCTCCACTTCCGCGCCTCATTGCTTCGATACCCGCATCT
CACTCCAGCCCTACATGTAGTTGTGTATATATACTATACGCACGCTCACG
TTCACGATCTAAACGACGTTCTCTATATGTTATCATACTCCTCATCCGCG
ATCTCTATAGTCCTATCATGCTCCTACGANTNTGCTACGCACTCCNCAGC
NTNTGTATTCGTGACTTGTCTATCGCCACGCGTCTGCTCNTCGATACTAG
CGCAGTACATTTGTGTCGTGTCTTTACTCATCTGTACCACTCACCACNCG
GCGCACGCGTGTCTGTGTATTCTGTACACAGCAGCGGCGNCGTNGTCTCA
CNGTCTGGCGCACTACTCGTCGTTCANCTATTCGCATCGTGCGCGCGCTC
GTATTACACNGCATACATCTACCGCCGTACTTTTTTGTTNTCCCGCCCNT
NCGTCTCCTACTGCAGCGACGCTTTTCTANTTGCGTCGCCCGNCTATGNC
CTACGCTCAGTGCAGCGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAGGGGATAAGGCAATCCAGTGCTACTTGTCAAGG
GCCTCTATTTAACTACTACCCCTTCCCTCTACTGCGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTATACATATGTATACACATATATCAA
TGAAATGGGACACCTGAATCATATAGATGGTCAGTTTCATAGCAAGATCC
TCAGAGTTCATCTGATACCCTGCCCCCAAATATATGGACTTTTTGTCATA
CGGCATCCATGCCATGAATCAACAATGTTTATTAAATCCATTTGTATTTA
GTAAATAGGATCAATTCACATGAAAATAAAATAAACAAGATAGGATAGAA
GGCTAGCACTATCAACACACCTAAGGGAAGATGTAAGCAAGGTGTTAAAG
CCTCTCCCTAGGTGAAAACTACAATTTGTCAGCAATAAAGAATGGAGTTG
GGTGATGCCAATAGTAGGGCAAAACAGCCAAATTCATATCCAGTCTGTCA
ATAAAAAGTCAGACATAATGAAATATTGGTGATGTCCAGGTAAGATTATC
AAGAGAAGTGGAAAATGCCAGAGAAAAGGAACAGTGGACAGGGGCTATGC
TTCTGTCAATCCTGAGTTCCTAAGGGAAACTCAAATAATGTCACCACTGA
GGTACTGTGAGCAGCAACATGCTGTCTTGTCCAATCTCTATGCAACCCCC
CTCATTTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_p17.g1 MSMg01no514_p17.g1 CHROMAT_FILE:
MSMg01no514_p17.g1 PHD_FILE: MSMg01no514_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:05 2005
         (697 letters)



>mm_chr4_65075095_65076191
          Length = 1097

 Score = 1292 bits (668), Expect = 0.0
 Identities = 690/702 (98%), Gaps = 8/702 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggggataaggcaatccagtgctacttgtcaagggcctctatttaactactacccctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 agaggggataaggcaatccagtgctacttgtcaagggcctctatttaactactacccctt 252

                                                                       
Query: 61  ccctctactgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--------a 112
           |||||||||||||||||||||||||||||||||||||||||||||||||||        |
Sbjct: 253 ccctctactgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta 312

                                                                       
Query: 113 tacatatgtatacacatatatcaatgaaatgggacacctgaatcatatagatggtcagtt 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tacatatgtatacacatatatcaatgaaatgggacacctgaatcatatagatggtcagtt 372

                                                                       
Query: 173 tcatagcaagatcctcagagttcatctgataccctgcccccaaatatatggactttttgt 232
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 373 tcatagcaagatcctcagagttcatctgacaccctgcccccaaatatatggactttttgt 432

                                                                       
Query: 233 catacggcatccatgccatgaatcaacaatgtttattaaatccatttgtatttagtaaat 292
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 catacagcattcatgccatgaatcaacaatgtttattaaatccatttgtatttagtaaat 492

                                                                       
Query: 293 aggatcaattcacatgaaaataaaataaacaagataggatagaaggctagcactatcaac 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aggatcaattcacatgaaaataaaataaacaagataggatagaaggctagcactatcaac 552

                                                                       
Query: 353 acacctaagggaagatgtaagcaaggtgttaaagcctctccctaggtgaaaactacaatt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acacctaagggaagatgtaagcaaggtgttaaagcctctccctaggtgaaaactacaatt 612

                                                                       
Query: 413 tgtcagcaataaagaatggagttgggtgatgccaatagtagggcaaaacagccaaattca 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgtcagcaataaagaatggagttgggtgatgccaatagtagggcaaaacagccaaattca 672

                                                                       
Query: 473 tatccagtctgtcaataaaaagtcagacataatgaaatattggtgatgtccaggtaagat 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tatccagtctgtcaataaaaagtcagacataatgaaatattggtgatgtccaggtaagat 732

                                                                       
Query: 533 tatcaagagaagtggaaaatgccagagaaaaggaacagtggacaggggctatgcttctgt 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tatcaagagaagtggaaaatgccagagaaaaggaacagtggacaggggctatgcttctgt 792

                                                                       
Query: 593 caatcctgagttcctaagggaaactcaaataatgtcaccactgaggtactgtgagcagca 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 caatcctgagttcctaagggaaactcaaataatgtcaccactgaggtactgtgagcagca 852

                                                     
Query: 653 acatgctgtcttgtccaatctctatgcaacccccctcattta 694
           |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 853 acatgctgtcttgtccaatctctatgcaacccccctaattta 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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