XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGGATCCGCGGAATTCC
TGGTCACTGCCCAGATGTGCTCACCATCAGTTTGCTCCTGAGTATGGCAG
AAAACTTGTGTGATCTCTATAAAGAAAGTTAAAAATGCTGTGTACAAACC
TGTGTTTCCTGCTAAATTGTCTTATTTTGCTCCACAGGGTGTCAGGAAAC
TTGTGTGATCTTTTTAAGTGAAGGTATAAACATTGTGTGTAAAAATGTTT
CCTGCTAAACTGTTTTAATGTTGGAATTGTGCATTTAAAGATCTCGTGTG
CTTTGATTGTTGATGTACAGACATGTTTTGATTAGTCTTCCCGTCCAAAT
GTCTTCTTTTGCTTCACAGCCTTGAACAATTGAACATCTTCTGATGCAAG
AAATGAGGGCTTCTATCTGCCCTGCACGGTCCTGGAGGCATCTGATGTTT
CTTTCTCCTCATGTAGCTGGTTGGGGCTGTGGATCTCTGTCAACCACGCT
GTCACCTATGTATCTCATCAACAAACATTCTGGATAGATGGCCCAACTTC
CTGAGGAACATCCAGGCCGCAGAGCTCTAGGTCTGAAGCCGGCTGTCACT
CAGAGGTCACTTAAGAGTTAGATTAAGTCCTGTGCTATACAGAACCAAAA
TGTCCAGTCTGGCCACCAAGCCCCACCCTTTTCTTTTAGCTGCTCATTGA
AACCAGGGGCCTCAGACATATCAGAGGAGGGCTCCACCACTGACTCACCN

CTTTCGTANNCGCCCNCCGNCCNTCTACTTTANGTGACCTATANAAGGAT
CCTCGGAATTCCCTTTAATGATTANTGTTGATTTTANGCCACNNANANNA
TGAGAACAAAATCCTAATTTTATAAGCTCTTCTGAAGTGACATCACATAT
ATGAATCTACAGTCACTGAACCAAAAAACCTTCATAAAGTGTCCANTTCC
TTCCAAANTCCCAAATTCAAAAATTTNGAAAAAATCAACCCTAAAAATAA
TCCAAAGCCGGGAAAATTTAAGCACATTTTTAACCCATTTTTTGCCCCCA
AATTTGGCCCCTTTTTCCCCCCCCCCATTTTTAAAAAGGGTTTTTCTTTT
TTCCCTTAAAAATGGAAAAAAAACAAGGGGGGGGGGGGAAATATTATAAA
AAAATTGGGTTGCTCTGGGGGGGGGCCCCCCAAAAAAATTTTTTGGGGGG
CAGGTTCTTTTGGAAAAAAAAATTTTTTTTTTCCCCCCCTTTTTGGGGGG
GGGGCCCCCCCCCCATAAAAACTTTTTTTTTTTTTTTCTATAAAAAAAAA
AAATTAATTTTTTTTTATAAAAAAAACCCCTCCTTTTTTTCCTTCCCCTC
TCTCTTTTGTTATAAACNCCCCTCTGTCCCTACAAAAAACAAATTCTTTT
CCCAATATAAAAAATAATATTATTTCTTCTTTTTTTTTAAAAAAAAAAAT
AAACACCTCCTCCTTCATAAAAAACAAATAAAACATTTTTTTTTTTGTTT
TTTTTTTCTCTCTCATATAAACAAAAACAATCTNTCTTTCTCTTTTAGAT
GATATGGGTTG

Query= MSMg01no514_p23.b1 MSMg01no514_p23.b1 CHROMAT_FILE:
MSMg01no514_p23.b1 PHD_FILE: MSMg01no514_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:07 2005
         (537 letters)



>mm_chr4_8346995_8347931
          Length = 937

 Score =  959 bits (496), Expect = 0.0
 Identities = 523/532 (98%), Gaps = 2/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctggtcactgcccagatgtgctcaccatcagtttgctcctgagtatggcagaaa 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaattcctggtcactgtccagatgtgctcaccatcagtttgctcctgagtatggcagaaa 678

                                                                       
Query: 67  acttgtgtgatctctataaagaaagttaaaaatgctgtgtacaaacctgtgtttcctgct 126
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 677 acttgtgtgatctctataaagaaagttaaaaatgctgtgtataaacctgtgtttcctgct 618

                                                                       
Query: 127 aaattg-tcttattttgctccacagggtgtcaggaaacttgtgtgatctttttaagtgaa 185
           |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 617 aaattgctc-tattttgctccacagggtggcaggaaacttgtgtgatctttttaagtgaa 559

                                                                       
Query: 186 ggtataaacattgtgtgtaaaaatgtttcctgctaaactgttttaatgttggaattgtgc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggtataaacattgtgtgtaaaaatgtttcctgctaaactgttttaatgttggaattgtgc 499

                                                                       
Query: 246 atttaaagatctcgtgtgctttgattgttgatgtacagacatgttttgattagtcttccc 305
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 atttaaagatctcgtgtgctttgattgttgatgtacagacaggttttgattagtcttccc 439

                                                                       
Query: 306 gtccaaatgtcttcttttgcttcacagccttgaacaattgaacatcttctgatgcaagaa 365
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 438 gtccaaatgtcttcttttgcttcacagccttgaacaattggacatcttctgatgcaagaa 379

                                                                       
Query: 366 atgagggcttctatctgccctgcacggtcctggaggcatctgatgtttctttctcctcat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 378 atgagggcttctatctgccctgcacggtcctggaggcatctgatgtttctttctccttat 319

                                                                       
Query: 426 gtagctggttggggctgtggatctctgtcaaccacgctgtcacctatgtatctcatcaac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtagctggttggggctgtggatctctgtcaaccacgctgtcacctatgtatctcatcaac 259

                                                               
Query: 486 aaacattctggatagatggcccaacttcctgaggaacatccaggccgcagag 537
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 258 aaacattctggatagatggcccaacttcctgaggaacatccaggctgcagag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)