NNNNTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAA
ACCAGTAGCCAGCATCAAAGTAAATGGTGAGACGCTTGAAGCAATCCCAC
TAAAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAAC
ATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAA
GGGGATACAAATTGGAAAGGAAGAAGTCAAATTATCACTTTTTGCAGATG
ATATGATAGTATATATACGTGACCCTAAAAATTCCACCAGAGAACTCCTA
AGCCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATCAACTCAAA
CAAGTCAATGGCCTTTCTCTACACAAAGGACAAACAGGCTGAGGAAGAAA
TTAGGGAAACAACACCCTTCTCAATAGCTACAAATAATATAAAATACCTA
GGCGTGACTCTAACTAAGGAAGTGAAAGATCTCTATGACAAGAACTTCAA
GTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCC
CATGCTCATGGATCAGCAGGATCAGTATAGAAAAAATGGCTATCTTGCCA
AAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTNCATT
CTTCAACGAATTAGAAAGGGNNCATCGCAGATTCATCTGGGATAACAAAA
AACCTAGGATAGCAAAAACTC

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAATCAACAGCTTTACTTGGAGGGGCCAATTCCAA
TTTGTGCCACTCCTATAGTTTCAGAACCAGATGAGCAAAACTAGGAAATG
AGGACATGACACTTCTAGGTCTGGAGGAGGAGATAGGTTATTGTAAATAT
GATAGAGAAAACAGTAAGAGGCATCTGGAAGAGTCCAGACTAAACTGGAT
CCTGAGAGGAGAGAAGGTGGGGGAGAGTGGGAGAGGTACAAACCAGGAGT
GAAGATGCTAGGAGGGAGCCAGGAGACCGTGATTCCAGAATAGCCCAAAT
TGCTGGGGGAAGAGACCCAGTCCAGACCCTGAGCTAGAGAGTTTAGGGTA
GGTGGCAGGTTATGCCAGACAGAAAGACTCTTTAACAGCTACTGGAAAAT
GCTGGGACAGCCCAGCAGCCTGGCCTGCTTTGATATGTTAATCTCAGTTA
GCAAATTGGCATGAGTTTAAGAACTAACCTTATCCACACAGTAAAAGCAA
TAACTGGAACTCAGTACAGTTAAGTCTTGGCCCAGAGACCACTGTAGATG
ATCAATTTATTAAATTGGAATCAAGAGACTGTGGATTTTCTTATTTGTCT
ATGACACATACTCTACAGACAGAAAAATTGTTTAAAATATACATTAATTG
AATAAATAGGTGGAGAACTGGATCAGACAGTCCCGAATTNAAAAATAAAA
AAATCTTAGGTTN

Query= MSMg01no515_d11.g1 MSMg01no515_d11.g1 CHROMAT_FILE:
MSMg01no515_d11.g1 PHD_FILE: MSMg01no515_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:26 2005
         (640 letters)



>mm_chr4_90276003_90277042
          Length = 1040

 Score =  793 bits (410), Expect = 0.0
 Identities = 413/414 (99%)
 Strand = Plus / Minus

                                                                        
Query: 227  accaggagtgaagatgctaggagggagccaggagaccgtgattccagaatagcccaaatt 286
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1040 accaggagtgaagatgctaggagggagccaggagaccatgattccagaatagcccaaatt 981

                                                                        
Query: 287  gctgggggaagagacccagtccagaccctgagctagagagtttagggtaggtggcaggtt 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  gctgggggaagagacccagtccagaccctgagctagagagtttagggtaggtggcaggtt 921

                                                                        
Query: 347  atgccagacagaaagactctttaacagctactggaaaatgctgggacagcccagcagcct 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  atgccagacagaaagactctttaacagctactggaaaatgctgggacagcccagcagcct 861

                                                                        
Query: 407  ggcctgctttgatatgttaatctcagttagcaaattggcatgagtttaagaactaacctt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860  ggcctgctttgatatgttaatctcagttagcaaattggcatgagtttaagaactaacctt 801

                                                                        
Query: 467  atccacacagtaaaagcaataactggaactcagtacagttaagtcttggcccagagacca 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800  atccacacagtaaaagcaataactggaactcagtacagttaagtcttggcccagagacca 741

                                                                        
Query: 527  ctgtagatgatcaatttattaaattggaatcaagagactgtggattttcttatttgtcta 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740  ctgtagatgatcaatttattaaattggaatcaagagactgtggattttcttatttgtcta 681

                                                                  
Query: 587  tgacacatactctacagacagaaaaattgtttaaaatatacattaattgaataa 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680  tgacacatactctacagacagaaaaattgtttaaaatatacattaattgaataa 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)