BAC Information

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BAC

Clone NameMSMg01-515I19
Chromosome4 (Build37)
Map Location 128,745,469 - 128,746,132
singlet/doubletsinglet
Overlap geneIbrdc3
Upstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2
Downstream geneTmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515I19.T7 (MSMg01no515_i19.b1)MSMg01-515I19.TJ (MSMg01no515_i19.g1)
ACCAG587762AG587763
length741751
length of high quality
(start - end)		514 (73 - 586)632 (84 - 715)
definitionCHROMAT_FILE: MSMg01no515_i19.b1 PHD_FILE: MSMg01no515_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:54 2005CHROMAT_FILE: MSMg01no515_i19.g1 PHD_FILE: MSMg01no515_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTATTTATAATTGCGGCGCTAAACGACTCCTATATTCAGAGGACCG
CGGAATTCCAAGGTTCTCCTCACAACCCACACATTCACAAGGGACAGCTC
ACAACCCACACATGACTGTAGCTTCCGGGCATGGACACCCTCTCTGGGCT
CCCTGGGCAGATGTACATACATTCATATGGATAAATACACATAAATAAAC
ATAAAACAATTATTGAGGACCCCGTAAGTGCTGGGTGGTGGCGATGTACA
CCTTTAATCCTAGCACTCAGGAGGCAGAGGCAGGTGGCTGAGTTAGGGAT
CAGCCTCATCTACAGAGGGAATTCCAGGACAGCCAGGGCTAGACAGAGTA
ACCCTGTCTCAAAAACACAGAAACAAACAAACAAACAAACAAAAAACAAA
CAAACAAAAAACAAACTAGAACAACAACAGGAGAAGAAAAAGAAGAAGAG
AAAGAAAGAGAGAAAGAAAAGAAAAGAAAACACATAAAAACAAAACCCTA
AAAGGCCTGAGGGATATAGCTCAGCTGACAGAGTACCTACCTAGAACTTT
CAGGTGGGAGGGTTTGGGGAGGGGGGCTGTTGGTTTTCTCTTCAGTACCA
GGGGAACCAAGAGGGACGGCTGACACCTGTAATTTTAGCACTTGCGAGGT
GGAGTCATGAGCATCAGGAATTCAAGTTGATTCTTGATCTTCAGGTCATT
TTTCTCCGCCTAATTATGATGTGTGTGTGTTTCTTCTCCAT

NNNTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTCTTATGTCCTGA
GTAAGTCTGTGTCATAGTGATAGACTGCCATAGAGTCATCAGGATTGGGG
GTTATTTTACTTCCTCGGAACTAAATTCTACTCCTAAAGGTGGTTTCCCA
TTGTTTGCCTGCCAGTCTGTGGCCTGTCTGTACTGCTTGGTTGTCATGCC
TTGAAATTTGAGGACTGTCTGCTCACTGCTCAGTGAAAGGATGCCAAATC
TGCCAAAATAAAGGAAAACGGGGTAATGTGAATGAAATCTGAAGCTGCAG
CACATACTTTCATATTCCCATCATATAGACCCAGAACAGGCAGAGAATGG
AGCAGCCGTGCCCAGGTTTGACAGTGAAGGAATTGGAGGAAGAAAAAGAA
AAAGAAAAGAAAAGAAAATAAAAGAAATGTTGAGGCTGGAGGACTTGGCT
CCGTAGTGGAATATATGCTTACAGAGTGCTAGGTCCAATCCCCTACACAC
ACACACATACACAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGAC
AGACAGACAGAGACAGAGGAGAGAGGAAATAAGCACTTGAATAATCATGT
GATGTAGGAATGTGTTATAAAGTTTTAAGCCCCCCCCCATTGGTACTCTT
CTTACTTTATATCTTTAGAACTTCGCTAATTACTTTTAGAAGCCATCTGT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_i19.g1 MSMg01no515_i19.g1 CHROMAT_FILE:
MSMg01no515_i19.g1 PHD_FILE: MSMg01no515_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:55 2005
         (632 letters)



>mm_chr4_128745269_128746300
          Length = 1032

 Score = 1029 bits (532), Expect = 0.0
 Identities = 614/678 (90%), Gaps = 60/678 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtcttatgtcctgagtaagtctgtgtcatagtgatagactgccatagagtcatcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtcttatgtcctgagtaagtctgtgtcatagtgatagactgccatagagtcatcagg 260

                                                                       
Query: 61  attgggggttattttacttcctcggaactaaattctactcctaaaggtggtttcccattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgggggttattttacttcctcggaactaaattctactcctaaaggtggtttcccattg 320

                                                                       
Query: 121 tttgcctgccagtctgtggcctgtctgtactgcttggttgtcatgccttgaaatttgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcctgccagtctgtggcctgtctgtactgcttggttgtcatgccttgaaatttgagg 380

                                                                       
Query: 181 actgtctgctcactgctcagtgaaaggatgccaaatctgccaaaataaaggaaaacgggg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtctgctcactgcccagtgaaaggatgccaaatctgccaaaataaaggaaaacgggg 440

                                                                       
Query: 241 taatgtgaatgaaatctgaagctgcagcacatactttcatattcccatcatatagaccca 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 taatgtgaatgaaatctgaagctgcagcacatactttcatattcccgtcatatagaccca 500

                                                                       
Query: 301 gaacaggcagagaatggagcagccgtgcccaggtttgacagtgaaggaattggaggaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gaacaggcagagaatggagcagccgtgcccaggtttgacagtgaaggaattgggggaaga 560

                                                                       
Query: 361 aaaagaaaaagaaaagaaaagaaaataaaagaaatgttgaggctggaggacttggctccg 420
           |||||||||||||||              |||||||||||||||||||||||||||||||
Sbjct: 561 aaaagaaaaagaaaa--------------agaaatgttgaggctggaggacttggctccg 606

                                                                       
Query: 421 tagtggaatatatgcttacagagtgctaggtccaatcccctacacacacacacatacaca 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tagtgcaatatatgcttacagagtgctaggtccaatcccctacacacacacacatacaca 666

                                                                       
Query: 481 --------------------------------gagagagagagagagagagacag----- 503
                                           |||||||||||||||||||||||     
Sbjct: 667 cacacagagagagagagagagagagagagagagagagagagagagagagagacaggcaga 726

                                                                       
Query: 504 ---acagacagacagacagacagacagagacagaggagagag--gaaataagcacttgaa 558
              |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 727 cagacagacagacagacagacagacagagacagaggagagagaggaaataagcacttgaa 786

                                                                       
Query: 559 taatcatgtgatgtaggaatgtgttataaagttttaagcc----cccccccattggtact 614
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 787 taatcatgtgatgtaggaatgtgttataaagttttaagcctccccccccccattggtact 846

                             
Query: 615 cttcttactttatatctt 632
           ||||||||||||||||||
Sbjct: 847 cttcttactttatatctt 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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