Query= MSMg01no515_j02.b1 MSMg01no515_j02.b1 CHROMAT_FILE:
MSMg01no515_j02.b1 PHD_FILE: MSMg01no515_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:56 2005
(588 letters)
>mm_chr4_17610283_17611270
Length = 988
Score = 973 bits (503), Expect = 0.0
Identities = 575/625 (92%), Gaps = 42/625 (6%)
Strand = Plus / Plus
Query: 5 gaattctcataaatttattcagagttaactaatgttatacttttctttctatatctgatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gaattctcataaatttattcagagttaactaatgttatacttttctttctatatctgatt 224
Query: 65 aatggttagtaaaattgctaaaatgaatcatttcttaggatcaaactctgtccacacaca 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 catggttagtaaaattgctaaaatgaatcatttcttaggatcaaactctgtccacacaca 284
Query: 125 cacacacaca----------------------------------------cacaccaatc 144
|||||||||| ||||||||||
Sbjct: 285 cacacacacatacacacacacacacacacacacacacacacacacacacacacaccaatc 344
Query: 145 ctattatgtcgttgcttactttcttctgaagagtgttcatgtaatttaaaatttcatgtt 204
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctattatgtcgttgcttattttcttctgaagagtgttcatgtaatttaaaatttcatgtt 404
Query: 205 atatcataagatatcaaatcaaagaatttcacattatagttattttgctcacagatagaa 264
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atatcataaaatatcaaatcaaagaatttcacattatagttattttgctcacagatagaa 464
Query: 265 ttgttaaaaacaatcagataataatgtaatagcagaaatgcctctgaaagagaacttgta 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttgttaaaaacaatcagataataatgtaatagcagaaatgcctctgaaagagaacttgta 524
Query: 325 ctttcactttacctatcttgttttgcatctcattacattaactagtttcccatatacaag 384
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctttcactttacctaccctgttttgcatctcattacattaactagtttcccatatacaag 584
Query: 385 tttgcttaaataaggacacatataacttgcacttaatttaatatatcacctttcagtaat 444
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 585 tttgcttaaataaggatacatataacttgcacttaatttaatatatcacttttcagtaat 644
Query: 445 ttgttttatatatcatccttgttttgttctatgtcagcctaattaattattcatcatttg 504
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttgttttatatatcatccttgctttgttctatgtcagcctaattaattattcatcatttg 704
Query: 505 gctgttgctttaa-aaacctttcaaattgatatattgaaaatgtctaagaacttatatat 563
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gctgttgctttaagaaac-tttcaaattgatatattgaaaatgtctaagaacttatatat 763
Query: 564 attttttccattaggaacttttttc 588
|||||||||||||||||||||||||
Sbjct: 764 attttttccattaggaacttttttc 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_j02.g1 MSMg01no515_j02.g1 CHROMAT_FILE:
MSMg01no515_j02.g1 PHD_FILE: MSMg01no515_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:56 2005
(585 letters)
>mm_chr4_17732914_17733898
Length = 985
Score = 1062 bits (549), Expect = 0.0
Identities = 561/565 (99%)
Strand = Plus / Minus
Query: 1 aggtcttaaaataggtgactgattggaattcttttgattccaataagtaactattatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 aggtcttaaaataggtgactgattggaattcttttgattccaataagtaactattatgtt 872
Query: 61 tttgctgggggaagtgtgtatgttttggagtctagtcccaaagcatacatctacaaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tttgctgggggaagtgtgtatgttttggagtctagtcccaaagcatacatctacaaaaca 812
Query: 121 ctccctcactaaggcccagggaaaattatgtaagaggagacagaaagattgtaaaatctt 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ctccctcgctaaggcccagggaaaattatgtaagaggagacagaaagattgtaaaatctt 752
Query: 181 gagagagttctctgagattgcttttctatttttaattgtagtagatattacagtaaatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gagagagttctctgagattgcttttctatttttaattgtagtagatattacagtaaatcc 692
Query: 241 tgtctctgccttctacttggtctagtgttatttatcttgcacattgcttatatccatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgtctctgccttctacttggtctagtgttatttatcttgcacattgcttatatccatcat 632
Query: 301 ttcaagatattgctaacagagatttgtaccatacattccaattggacagcagctctccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttcaagatattgctaacagagatttgtaccatacattccaattggacagcagctctccag 572
Query: 361 gaaactgaatcatccttctggcttctggtttttatttttcttgttagtggtgactcctga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caaactgaatcatccttctggcttctggtttttatttttcttgttagtggtgactcctga 512
Query: 421 tcagcagagagaaggaagataactttttggttaatgaattttgagcctatagtttgtgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 511 tcagcagagagaaggaagataactttttggttaatgaattttgagcctatagtttatgaa 452
Query: 481 tattcctctgtgtgtgtgcttgtgcatatagatgcctgtctctgtcaggcttaccaacag 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 451 tattcctctgtgtgtgtgcttgtgcatatatatgcctgtctctgtcaggcttaccaacag 392
Query: 541 tttgatcttatggaggcatattctt 565
|||||||||||||||||||||||||
Sbjct: 391 tttgatcttatggaggcatattctt 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
