BAC Information

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BAC

Clone NameMSMg01-515L11
Chromosome4 (Build37)
Map Location 139,560,436 - 139,754,883
singlet/doubletdoublet
Overlap geneIgsf21
Upstream geneTmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
Downstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515L11.T7 (MSMg01no515_l11.b1)MSMg01-515L11.TJ (MSMg01no515_l11.g1)
ACCAG587889AG587890
length767768
length of high quality
(start - end)		647 (49 - 695)652 (79 - 730)
definitionCHROMAT_FILE: MSMg01no515_l11.b1 PHD_FILE: MSMg01no515_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:09 2005CHROMAT_FILE: MSMg01no515_l11.g1 PHD_FILE: MSMg01no515_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,754,370 - 139,754,883)(139,560,436 - 139,561,087)
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTCAGTCACATGGCCATGTCTGGGGAGACTGTCTTCAGTAC
CTTAACTAATGTGGGAAGGTCCAGTCTGAAGGAAGGTAGTACCTTGCCCT
GGTTGGGCCCTGGACTGTGTAAGAGTAGAGGAAGGCAGCTGAGGTAAACA
CGCAAGCCTCCATTCTTCCTGCTCCTGACTGGGACTGGGAAGGGACCAGC
TGTTTCACACTCTTGCCTTGACCCCCCTCCCCCCCAAAATGAAGAATTAC
AACCTTGAATTGTGAGCAGAAATGAACCCTCTGTCCTCTAAGCTGCTTTT
CTGGTAAGGTATTTTGTCCTAGAAACAGGAAGGACGTAGGGTGTCCACGG
TGTTTCTTCTCGTTAGCAGGGGTGTAAGTGGAGTGGCGTGGTCACTCACC
AAGTCTGTGCTGTGATTGTGATTGTCTCAGTGATGTCCACTGACGCAGCT
GTTCTGGGAACACATGTTGCTTGATCCTGGAAGCTTATGGCTGAACTTTA
GGGATAGCCCTCCCCACATCCCCACTAAACAAATGATCTCAGACTCTGGT
GGACTGGAGGACCAGAGTCAGAAGTAACTCAGTGATAGATGCTCTCCAGA
AACCCCTTGGCTGATCTGCAGCTGGGCCTTGGGGTTTAGTCTCAGAGAAG
TCCATGAGGAGTCCTCACAGGGACCCCAAATGGCTTATAAGCGCCAAGAG
GTCTTCACATGTCCACN

NAACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCATCCACGAATAGGGGAG
CGGCCAGATTTCTGCAGCAAGGTGCCAGCAGTAGCAGACCCTCCCACCAG
TGCCACGGGTGTGTTCAGCCACCAGCAATAGACATCCGATACCCCCAACA
ATTCCTAACTCTTGCCCCTGATCTTGGCTTCTCCGGTGCCGGCGCACCCA
TCTGTTTGTTTCCTAGTCCGGTGCAGGGAACTGTATATCCAAACAAAGCT
CTCAGTTAGGGAGCCACCCTCTCCTAGGCAGGCACCCCTGTGTGGTGATG
CGTCCAAGCTGCGCGTGGCTTCCCGCTGGAGAGTGGTCGGAGGACAGAGG
CGTGAAGGTCCGAACAACAGGCTGAGTGGTGATAGCTAGCCAGCTTTGAG
AATGAATGATCAAGACAGGTTTCCCTGAGAACTGTATGAGCTAAGAACTG
AGCTCCAGATCTCAAACCAGCATCTCCTCATTTAGAACAGTGCCTGGGCA
CGAGTAAATATTTACTGACTGCATAAAGAAACCAAGTCTGAGCAGAAGGT
GGGGGACGGGTGGAAATGAGCCAGAGAAAAAGGTGGAGGGACGCAGACAG
GAAGAACAGATCAGAACAGGAGTGAGCAGTGGGAAAGAGTCCTGCAGGAG
GGTTCAGTACAGCAGGGGGTGGAGCTTGGAAGATTGGGCGGGACCTTAGA
GACCCCCTGTGGTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_l11.b1 MSMg01no515_l11.b1 CHROMAT_FILE:
MSMg01no515_l11.b1 PHD_FILE: MSMg01no515_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:09 2005
         (647 letters)



>mm_chr4_139753837_139754883
          Length = 1047

 Score =  994 bits (514), Expect = 0.0
 Identities = 514/514 (100%)
 Strand = Plus / Minus

                                                                        
Query: 134  aaggcagctgaggtaaacacgcaagcctccattcttcctgctcctgactgggactgggaa 193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 aaggcagctgaggtaaacacgcaagcctccattcttcctgctcctgactgggactgggaa 988

                                                                        
Query: 194  gggaccagctgtttcacactcttgccttgacccccctcccccccaaaatgaagaattaca 253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  gggaccagctgtttcacactcttgccttgacccccctcccccccaaaatgaagaattaca 928

                                                                        
Query: 254  accttgaattgtgagcagaaatgaaccctctgtcctctaagctgcttttctggtaaggta 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  accttgaattgtgagcagaaatgaaccctctgtcctctaagctgcttttctggtaaggta 868

                                                                        
Query: 314  ttttgtcctagaaacaggaaggacgtagggtgtccacggtgtttcttctcgttagcaggg 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  ttttgtcctagaaacaggaaggacgtagggtgtccacggtgtttcttctcgttagcaggg 808

                                                                        
Query: 374  gtgtaagtggagtggcgtggtcactcaccaagtctgtgctgtgattgtgattgtctcagt 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  gtgtaagtggagtggcgtggtcactcaccaagtctgtgctgtgattgtgattgtctcagt 748

                                                                        
Query: 434  gatgtccactgacgcagctgttctgggaacacatgttgcttgatcctggaagcttatggc 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  gatgtccactgacgcagctgttctgggaacacatgttgcttgatcctggaagcttatggc 688

                                                                        
Query: 494  tgaactttagggatagccctccccacatccccactaaacaaatgatctcagactctggtg 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  tgaactttagggatagccctccccacatccccactaaacaaatgatctcagactctggtg 628

                                                                        
Query: 554  gactggaggaccagagtcagaagtaactcagtgatagatgctctccagaaaccccttggc 613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  gactggaggaccagagtcagaagtaactcagtgatagatgctctccagaaaccccttggc 568

                                              
Query: 614  tgatctgcagctgggccttggggtttagtctcag 647
            ||||||||||||||||||||||||||||||||||
Sbjct: 567  tgatctgcagctgggccttggggtttagtctcag 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_l11.g1 MSMg01no515_l11.g1 CHROMAT_FILE:
MSMg01no515_l11.g1 PHD_FILE: MSMg01no515_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:09 2005
         (652 letters)



>mm_chr4_139560236_139561287
          Length = 1052

 Score = 1261 bits (652), Expect = 0.0
 Identities = 652/652 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccatccacgaataggggagcggccagatttctgcagcaaggtgccagcagtagcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccatccacgaataggggagcggccagatttctgcagcaaggtgccagcagtagcaga 260

                                                                       
Query: 61  ccctcccaccagtgccacgggtgtgttcagccaccagcaatagacatccgatacccccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcccaccagtgccacgggtgtgttcagccaccagcaatagacatccgatacccccaa 320

                                                                       
Query: 121 caattcctaactcttgcccctgatcttggcttctccggtgccggcgcacccatctgtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattcctaactcttgcccctgatcttggcttctccggtgccggcgcacccatctgtttg 380

                                                                       
Query: 181 tttcctagtccggtgcagggaactgtatatccaaacaaagctctcagttagggagccacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcctagtccggtgcagggaactgtatatccaaacaaagctctcagttagggagccacc 440

                                                                       
Query: 241 ctctcctaggcaggcacccctgtgtggtgatgcgtccaagctgcgcgtggcttcccgctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcctaggcaggcacccctgtgtggtgatgcgtccaagctgcgcgtggcttcccgctg 500

                                                                       
Query: 301 gagagtggtcggaggacagaggcgtgaaggtccgaacaacaggctgagtggtgatagcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagtggtcggaggacagaggcgtgaaggtccgaacaacaggctgagtggtgatagcta 560

                                                                       
Query: 361 gccagctttgagaatgaatgatcaagacaggtttccctgagaactgtatgagctaagaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccagctttgagaatgaatgatcaagacaggtttccctgagaactgtatgagctaagaac 620

                                                                       
Query: 421 tgagctccagatctcaaaccagcatctcctcatttagaacagtgcctgggcacgagtaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagctccagatctcaaaccagcatctcctcatttagaacagtgcctgggcacgagtaaa 680

                                                                       
Query: 481 tatttactgactgcataaagaaaccaagtctgagcagaaggtgggggacgggtggaaatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttactgactgcataaagaaaccaagtctgagcagaaggtgggggacgggtggaaatg 740

                                                                       
Query: 541 agccagagaaaaaggtggagggacgcagacaggaagaacagatcagaacaggagtgagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agccagagaaaaaggtggagggacgcagacaggaagaacagatcagaacaggagtgagca 800

                                                               
Query: 601 gtgggaaagagtcctgcaggagggttcagtacagcagggggtggagcttgga 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgggaaagagtcctgcaggagggttcagtacagcagggggtggagcttgga 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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