Query= MSMg01no516_a06.b1 MSMg01no516_a06.b1 CHROMAT_FILE:
MSMg01no516_a06.b1 PHD_FILE: MSMg01no516_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:34 2005
(612 letters)
>mm_chr4_83129994_83131005
Length = 1012
Score = 1112 bits (575), Expect = 0.0
Identities = 601/611 (98%), Gaps = 6/611 (0%)
Strand = Plus / Minus
Query: 5 gaattccatcgtt--gtttcctgacagctgtgtatgagtactgacttagactgctcccta 62
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaattccatcgttgggtt--ctgacagctgtgtatgagtactgacttagactgctcccta 616
Query: 63 acttcccatcctcctggggtaccttgtttggtagggccttaatcctcagccttgtctata 122
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 615 acttcccatcctcctggggtaccttgtttggtagagccttaatcctcagccttgtctata 556
Query: 123 taattggtgttcttgttttcctataggaaaacttgtaaattactgctgtgtgtgtgcttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 taattggtgttcttgttttcctataggaaaacttgtaaattactgctgtgtgtgtgcttt 496
Query: 183 gaccgttacatatgttgcaaacgtctttaggacagtgacctaaagctgaatttctttatc 242
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 495 gaccgttacatatgttgcaaacgtctttagggcagtgacctaaagctgaatttctttatc 436
Query: 243 ctagc-gctcttacatagtcatgcacttggaaaacactgcctttcaactttacagaagac 301
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ct-gctgctcttacatagtcatgcacttggaaaacactgcctttcaactttacagaagac 377
Query: 302 tcgctaggcttgggaaggtttcaaggcccccaagagacacttgatgattctaggtatcct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcgctaggcttgggaaggtttcaaggcccccaagagacacttgatgattctaggtatcct 317
Query: 362 gattttgagctgttaaaaatcatggttatctgatactcatattctaagttccatgcccca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gattttgagctgttaaaaatcatggttatctgatactcatattctaagttccatgcccca 257
Query: 422 atgtagttagaggccaggtgtaaatactttaaatttttttctgactttgacagctagaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgtagttagaggccaggtgtaaatactttaaatttttttctgactttgacagctagaga 197
Query: 482 aatggctccgtggttaagaggactcgctgctcagtggacctaattcggcacctatctcag 541
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 196 aatggctccgtggttaagaggactcgctgctcggtggacctaattcggcacttatctcag 137
Query: 542 gcagctcacatccacagtgatctgtctgtgatgacagggcagtgtcaccacctgcactct 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gcagctcacatccacagtgatctgtctgtgatgacagggcagtgtcaccacctgcactct 77
Query: 602 gcacacagcca 612
|||||||||||
Sbjct: 76 gcacacagcca 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_a06.g1 MSMg01no516_a06.g1 CHROMAT_FILE:
MSMg01no516_a06.g1 PHD_FILE: MSMg01no516_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:34 2005
(547 letters)
>mm_chr4_82953412_82954362
Length = 951
Score = 963 bits (498), Expect = 0.0
Identities = 534/548 (97%), Gaps = 4/548 (0%)
Strand = Plus / Plus
Query: 1 ctgggtcagaattgctaccctatgactctgaggtgtatctttactttcttcgcccagtcc 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctgggtcagaattgctaccctgtgactctgaggtgtatctttactttattcgcccagtcc 260
Query: 61 cggctctcatagctgacacaccaatgtacactctcaaagggactttagcagtgtgtttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggctctcatagctgacacaccaatgtacactctcaaagggactttagcagtgtgtttgg 320
Query: 121 tttgctgctgtctgaagctgacttcaccacttagccattacctaatctctcaactcctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgctgctgtctgaagctgacttcaccacttagccattacctaatctctcaactcctcc 380
Query: 181 aaatgcctgggtgtggattaggttccgcctgctcagattcaccagtgcatgcatacagtg 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgcctgggtgtagattaggttccgcctgctcagattcaccagtgcatgcatacagtg 440
Query: 241 gggactaggagaaggaggaccctaagtgtctaggctagccagagtaaacagtgaaaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggactaggagaaggaggaccctaagtgtctaggctagccagagtaaacagtgaaaacaa 500
Query: 301 aataaaacagagca----caggctccttcagaacacagagcgccatgaaggcttagccct 356
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaaacaaaacaaacacaggctccttcagaacacagagcgccatgaaggcttagccct 560
Query: 357 agtcagggtttatcttaaatagacccagagggaggctcctggattgaagttttggtcctc 416
||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 agtcatggtttaccttaaatagacccagagggaggctcctgggttgaagttttggtcctc 620
Query: 417 gctggcagtgtgctagtgcttaagtactaactactgagctgtggtggggcctgtaagagc 476
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 621 gctggcagtgtgctagtgcttacgtactaactactgagctgtggcggggcctgtaagagc 680
Query: 477 tttgaagggaacgtgcccttggaggggatattggaacctgtctgtcttctctctttctct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgaagggaacgtgcccttggaggggatattggaacctgtctgtcttctctctttctct 740
Query: 537 cttcctgg 544
||||||||
Sbjct: 741 cttcctgg 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 951
Length adjustment: 10
Effective length of query: 537
Effective length of database: 941
Effective search space: 505317
Effective search space used: 505317
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
