Query= MSMg01no516_d12.b1 MSMg01no516_d12.b1 CHROMAT_FILE:
MSMg01no516_d12.b1 PHD_FILE: MSMg01no516_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:51 2005
(646 letters)
>mm_chr4_110900914_110901959
Length = 1046
Score = 851 bits (440), Expect = 0.0
Identities = 472/494 (95%), Gaps = 20/494 (4%)
Strand = Plus / Minus
Query: 173 tgagtcttagcttttttcacctgtacaatggacatttatacatatataacacattatata 232
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 tgagccttagcttttttcacctgtacaatggacatttatacatatataacacattatata 987
Query: 233 ttatatataaatatataatgcattatacataacacatatgtgtatatgcatacacttata 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ttatatataaatatataatgcattatacataacacatatgtgtatatgcatacacttata 927
Query: 293 ctccctgat-----------acac-cacacacacacacacacacacacaccatggtcacc 340
||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 926 ctccctgatataccacacacacacacacacacacacacacacacacacaccatggtcacc 867
Query: 341 atttgaggcaga--------atatatatatataatgagaattcaaataacataactgaca 392
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 atttgaggcagaatatatatatatatatatataatgagaattcaaataacataactgaca 807
Query: 393 tttttttctgtctcatgagactggtaaacaacattttctttgctgtgagacattctacaa 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tttttttctgtctcatgagactggtaaacaacattttctttgctgtgagacattctacaa 747
Query: 453 caggttctagcaggttattctatgtaacacattagtttataacttcagaccaggctttag 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 caggttctagcaggttattctatgtaacacattagtttataacttcagaccaggctttag 687
Query: 513 gtctcaacagtggctttaatgagaaaatccagttctgaatcctgatttcatgtttagcta 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtctcaacagtggctttaatgagaaaatccagttctgaatcctgatttcatgtttagcta 627
Query: 573 ccttgcttactctcatcaacaagcttcttcatttctggatccatcctttgcttttttagt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccttgcttactctcatcaacaagcttcttcatttctggatccatcctttgcttttttagt 567
Query: 633 tggtgctttcctaa 646
|||||| |||||||
Sbjct: 566 tggtgccttcctaa 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_d12.g1 MSMg01no516_d12.g1 CHROMAT_FILE:
MSMg01no516_d12.g1 PHD_FILE: MSMg01no516_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:51 2005
(647 letters)
>mm_chr4_110743357_110744403
Length = 1047
Score = 1220 bits (631), Expect = 0.0
Identities = 643/647 (99%)
Strand = Plus / Plus
Query: 1 tcaaaagaagactctctaatgactaagaagcacttaaagaaatgttcaaacatcaacagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tcaaaagaagactctctaatgactaagaagcacttaaagaaatgttcaaacatccacagt 260
Query: 61 catcagggaaatgcaaatcaaactgactcagattccatcttccacctgttataatggcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcagggaaatgcaaatcaaactgactcagattccatcttccacctgttataatggcta 320
Query: 121 ctgtcaaaaatgcaagtgacagcatatgctggcgaggacttggtacaagggaacactcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcaaaaatgcaagtgacagcatatgctggcgaggacttggtacaagggaacactcct 380
Query: 181 tcatgtaggagtgtacaaccactttggaaatcaatttggcattgtacctcaagacccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgtaggagtgtacaaccactttggaaatcaatttggcattgtacctcaagacccagc 440
Query: 241 tatatcgctcctgggcatatactcaaaagatgctgcactattccacagggacacctgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatcgctcctgggcatatactcaaaagatgctgcactattccacagggacacctgctc 500
Query: 301 aagttgtttgtgtcagctttattcataatagccaggatctggaaacaacctaaatgtccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttgtttgtgtcagctttattcataatagccaggatctggaaacaacctaaatgtccc 560
Query: 361 tcaaccaaataatggatacaggaaaaattgtgcattcacacagtggaatattattcagct 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tcaaccaaataatggatacaggaaaaattgtacattcacacagtggaatattattcagct 620
Query: 421 attaaaaacaaagacatcataaaattttcagggaatgaatacctgtgaataacctgttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaaaaacaaagacatcataaaattttcagggaatgaatacctgtgaataacctgttaa 680
Query: 481 ccattgaattcctctttatatcatttttctccacagtttctgcaaagtgtgtatccacct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccattgaattcctctttatatcatttttctccacagtttctgcaaagtgtgtatccacct 740
Query: 541 gttcttttctctaactgctccttaaagattctgccatattactctaggctgtggactctg 600
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 741 gttcttttctctaactgctccttaaagattttgccatattactctagactgtggactctg 800
Query: 601 atcacccacctagcatggcactgtgctctataaaaatcctatcttgg 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atcacccacctagcatggcactgtgctctataaaaatcctatcttgg 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
