BAC Information

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BAC

Clone NameMSMg01-516G24
Chromosome4 (Build37)
Map Location 48,150,789 - 48,151,223
singlet/doubletsinglet
Overlap geneStx17
Upstream geneCol15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3
Downstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516G24.T7 (MSMg01no516_g24.b1)MSMg01-516G24.TJ (MSMg01no516_g24.g1)
ACCAG588433AG588434
length676741
length of high quality
(start - end)		438 (55 - 492)413 (85 - 497)
definitionCHROMAT_FILE: MSMg01no516_g24.b1 PHD_FILE: MSMg01no516_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:10 2005CHROMAT_FILE: MSMg01no516_g24.g1 PHD_FILE: MSMg01no516_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAAAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTCTGTAAAGAAGGTAGAGGAAGATAGAAGGCGCAC
TGAAAAGCTTGGCTTTCTGTCTTATGTTGTAATGGCATGCACCTTACCAT
CCGCTACCACTCAAGCTTTGTTTTTTGTTCAGACCCCAACTCTGGTACTT
CCTGTGGTGTATACACTGACTAATGCCATCACCTCAGACATAAGCACACA
ATCTTGGCACAGCACTGTGCAGTAGACCTTGGCATTTATATATTTAATGC
CCATTTTTGACTATTTGGAGCAAAGCTGCAAATATCTGTGTTTCCAGACA
ATTATGATGGTGAAATAATAATTGCATAAAACCATCATAAGGAGTAAGAT
ATTGGATGATGGGACTGGAGAGTTAGCTAAGTAAATAAAGTGCTTGCCAA
ACAAGTGCGAGGACTGGAGTCTGCGTCTCCAGAGCCCATATGAAAGCTAA
GCAGGTATGGTGGTCTGCTTGAAATCTCAAAACATGGAGAAGCAGAGACA
GGATCTCCAGCGAGTTTTAGTTGGAAGTCCTATTGCTGTGATTTATAACC
ATGAACAACTGCAAGTGGGAAGAAAGCGTTTATTCTATCTTAAACTTCTA
AATCACAAATCCCATCACTGAAGAAC

NNNNNNNNCCAATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATATAGAAGGCTG
GCCTCAGACTTGCAGGGATACATCTGCCTCTGCCTCTTGAGTGCTGGGAT
TAATAAATGGACCAATATGTCCAACTCCATAGCAGCTTTTTTTCAAGGAT
TCTATGAATCAAACTCAGGTCCTCAGGCTTGTGTACCAGGTACGTACTGT
ACTTAACTGTCTCTCCAGCCCAAATAGCATATTTCTAAGATCACAGATTT
AAGTGGGATAAACAACATTTGAAAAGAAGTTTGCTAAATGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAGTTTAATGGGGATTATACTAAAAGCCCCAATCTATAGCAGACATGCAC
AACTTACTTTTTCTCCTCTCCCAAGTTGCATAATCATGGCTACTTAGAAG
ATGTCTTGCAACTATGTGTTCAGTCAGGATTTCCACAGTGTAGCTATTAG
ATTCAATTCCACTCCATTGGCTTGACTATNATACCTCACCGGGCATCTAC
ACTTTATTCCTCTTTCAAAGNNAGATTGATTGTCATGTTACTCTTCTTAG
ATACTTCAATCACGTACTTCAAATTTCTAAAAGGCTCCTTTGTAAAAAGG
ACTTTTCTTAAAAAAAAAAAGGCTAAGGATTGCTTTGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_g24.b1 MSMg01no516_g24.b1 CHROMAT_FILE:
MSMg01no516_g24.b1 PHD_FILE: MSMg01no516_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:10 2005
         (438 letters)



>mm_chr4_48150585_48151423
          Length = 839

 Score =  818 bits (423), Expect = 0.0
 Identities = 432/435 (99%), Gaps = 1/435 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctgtaaagaaggtagaggaagatagaaggcgcactgaaaagcttggctttct 64
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcctctgtaaagagggtagaggaagatagaaggcgcaccgaaaagcttggctttct 264

                                                                       
Query: 65  gtcttatgtt-gtaatggcatgcaccttaccatccgctaccactcaagctttgttttttg 123
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcttatgtttgtaatggcatgcaccttaccatccgctaccactcaagctttgttttttg 324

                                                                       
Query: 124 ttcagaccccaactctggtacttcctgtggtgtatacactgactaatgccatcacctcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcagaccccaactctggtacttcctgtggtgtatacactgactaatgccatcacctcag 384

                                                                       
Query: 184 acataagcacacaatcttggcacagcactgtgcagtagaccttggcatttatatatttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acataagcacacaatcttggcacagcactgtgcagtagaccttggcatttatatatttaa 444

                                                                       
Query: 244 tgcccatttttgactatttggagcaaagctgcaaatatctgtgtttccagacaattatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcccatttttgactatttggagcaaagctgcaaatatctgtgtttccagacaattatga 504

                                                                       
Query: 304 tggtgaaataataattgcataaaaccatcataaggagtaagatattggatgatgggactg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggtgaaataataattgcataaaaccatcataaggagtaagatattggatgatgggactg 564

                                                                       
Query: 364 gagagttagctaagtaaataaagtgcttgccaaacaagtgcgaggactggagtctgcgtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagagttagctaagtaaataaagtgcttgccaaacaagtgcgaggactggagtctgcgtc 624

                          
Query: 424 tccagagcccatatg 438
           |||||||||||||||
Sbjct: 625 tccagagcccatatg 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space:   356070
Effective search space used:   356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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