NAAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCCAGTATCTCTTTTGAGGGTCAATATGTGTTTTGAACT
TTTATATATATATATATATATATATATATAACAAATGTGGGCGCCTTGAT
TGATCATCTTGGTGGATTTTTCCTTTGATGAGTATGAAATTTCTTTCCCC
GTATCTTTAGATAACTTTTGGTCCAAAGTATATTTTATTTGATATTAGAA
AGGCTACTCCAACTTGTTTCTTGAGAATTTGTTTAGAAAATTTCTTTTCA
GGCTTTTACTCTGGGGTAGTGTCTATACTTAACACGGAGGTATATTTCTT
GAGTGCAGCAAAATGCTGGGTCAATTTTAAATATCTAATCTGATAGCCTA
TTTTTTTAATTGGGGGTCCATTGACATTGAGAAATATTAAAGATCAGTGA
TTGTTGTCGTTGTTGTTGTTGTTGTTTTTCCTGTTATTTTGTTGTTATAG
GTGGTATTATGTTTGTGTAGATTTCTTCTATTTCTTGGGTTTTCTTAGGT
GTAGTTTCCTTCCTTGTGTTGGAGTTTCCCTCCTATTAACCTCTGTAGGG
CTAGATTAGTAGAAGGATATTGTTTATCTTAATTTTGTCGTGGAATATCT
TGGTTTATCCACCAATGGTGATTGAGAATTTGGCTTGGTATAGTAGCCTG
GGCTGGCATTTTTGTTCTCTTANGTTCTGCATGACATCTTCCCAGTGTCT
TATGGCTTTAAAGAGTATGTG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACATCTAAGTCTTCAC
ACAGTTCATTCTTTCATTATTTAAAAGGTGTAATAATGAAAGTTATAGCA
ACGCTATTGTTAAAGACAGTGCTGCTCATTTAAGCTTGGGATGAAAATTT
TAAAGAAAATTGAACTCACATATAAAAGATTATTATAATGGAACACCATA
GGGACAGATAAAGTTTGAAGAGATGGCCCTTCTCATGACTGCTTTGAAGT
CTCTCTCTTCCTCCTCCTCCCTATCTTCCTCTCTCTCTCTCTCTCTCTCT
CTGTCAGATATGGTGCACCTCAGACCACCTAGTTTACTTTTATACACTAA
TCTCTTCTGGAAACACACACACACAAGTGCACACACACACGTGTTACTAC
TACCTCCAAAAATCCAACACCTTACCAGTTTCTAAGTATCCATTCTCCTT
CGCATGATGCAAGCACAGTGCCCACAATTGAAATCGCAATATTTGCTTCT
GGAGATTCCTTCTAAGCCTCTTCTAGAGCCTTTTGTTGGTTTCTTCCAGT
AGGAATTACAGTTTGTGGAATTTCAGCTTAAAATATTTCAGCACCAGGGA
GGTTAACCATTCCTGATTGTAATGTTGGGTAGGCCTTGGAGAATTTGAAT
GTTAGGCATTTTGATCTTTCAGGACTTGCCACCGGCTTTTGAGATATGAT
TTGTGCCTCTGTCCTTTATCCCATCAGGTCAN

Query= MSMg01no516_j21.g1 MSMg01no516_j21.g1 CHROMAT_FILE:
MSMg01no516_j21.g1 PHD_FILE: MSMg01no516_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:25 2005
         (506 letters)



>mm_chr4_28732825_28733734
          Length = 910

 Score =  758 bits (392), Expect = 0.0
 Identities = 421/440 (95%), Gaps = 16/440 (3%)
 Strand = Plus / Minus

                                                                       
Query: 83  gacagtgctgctcatttaagcttgggatgaaaattttaaagaaaattgaactcacatata 142
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 910 gacagtgctgctcatttaagcttgggatgaaaactttaaagaaaattgaactcacatata 851

                                                                       
Query: 143 aaagattattataatggaacaccatagggacagataaagtttgaagagatggcccttctc 202
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 850 aaagattattataatggaacaccatagggacagataaagtttaaagagatggcccttctc 791

                                                                       
Query: 203 atgactgctttgaagtctctctcttcctcctcctccctatcttcc------------tct 250
           |||||||||||||||||||||||||||||||||||||||||||||            |||
Sbjct: 790 atgactgctttgaagtctctctcttcctcctcctccctatcttcccttctctctctctct 731

                                                                       
Query: 251 ctctctctctctctctctctgtcagatatggtgcacctcagaccacctagtttactttta 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ctctctctctctctctctctgtcagatatggtgcacctcagaccacctagtttactttta 671

                                                                       
Query: 311 tacactaatctcttctggaaacacacacacacaagtgcacacacacac----gtgttact 366
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 670 tacactaatctcttctggaaacacacacacacaagtgcacacacacacacacgtgttact 611

                                                                       
Query: 367 actacctccaaaaatccaacaccttaccagtttctaagtatccattctccttcgcatgat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 610 actacctccaaaaatccaacaccttaccagtttctaagtatccattctccttcacatgat 551

                                                                       
Query: 427 gcaagcacagtgcccacaattgaaatcgcaatatttgcttctggagattccttctaagcc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gcaagcacagtgcccacaattgaaatcgcaatatttgcttctggagattccttctaagcc 491

                               
Query: 487 tcttctagagccttttgttg 506
           ||||||||||||||||||||
Sbjct: 490 tcttctagagccttttgttg 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 910
Length adjustment: 10
Effective length of query: 496
Effective length of database: 900
Effective search space:   446400
Effective search space used:   446400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)