TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCACACCATTATTTAAAAAAAAGAAGTCAGTCTTTAACATG
AGTGCTCTGGCACACGGTACACCCACACATACAAAAATGTTTTATGGCTT
TGGAGTCAAGAGATTTAAATTTTAAAATATAAAAATCCGATAGTGTTCTC
CTGGAAGAGCCGTTTAAAGCTTAGCATTAAGATGGAGATTTATTCACAAA
TCCCATTAAAATGAAATTCCAAACAAGTTTCTCGGAAAGGTATTTTTAAG
TGTGCAGTTTCAGAGGGGACATGATGGAATGGATGGCAGGAACTATAAAC
CCAGGAACTTTCATGGCAAGTCCTGGTGAAATGGGATGGGGAGTGGGCAG
GGGGGAGGCACCTTTGCATGCTCCTTGGGCTTTGGTGGCCCAAATTCAGC
AACATAGTCCTATCTAAGCTGGCACTGCCTGTGAAGGCTAGGAAGCCTGT
GAACGACCCTGTAGAATTTCAGAGTAACTTTCCTTGGGATAAAAACACCT
CCTCCGTAAGCAAACAGGGGTGGGGTTGGGGGTGGGACCAGACATTGTAC
AAGCCTTCTCTAGATTTGACAGACACCTCATTTTCTAAAGCGCGGCTCCC
CCAGGCGGTGCACGGACTTAATGTTGTAAACTAATACTTGATCAAACCAG
TATCAATCATCTTCCCGTTGGAAATGCAGTGAGGGAGATTCCCTGACTTC
AAGGGATGTAACCAGCACC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGAGGAATACTGAATGGC
TGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACCGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GATGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAAACACAAAGGAACTCGCACAATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTG
CTAAACACATGAAATTCATGAAGAACGAAGACCAAGTGTGGACACTTTGC
CCCTTCTTAGAATGGGAACTAA

Query= MSMg01no516_p06.b1 MSMg01no516_p06.b1 CHROMAT_FILE:
MSMg01no516_p06.b1 PHD_FILE: MSMg01no516_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:52 2005
         (628 letters)



>mm_chr4_55061247_55062272
          Length = 1026

 Score = 1183 bits (612), Expect = 0.0
 Identities = 621/624 (99%), Gaps = 2/624 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcacaccattatttaaaaaaaagaagtcagtctttaacatgagtgctctggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 gaattcttcacaccattatttaaaaaaaagaagtcagtctttaacatgagtgctctggca 901

                                                                       
Query: 65  cacggtacacccacacatacaaaaatgttttatggctttggagtcaagagatttaaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 cacggtacacccacacatacaaaaatgttttatggctttggagtcaagagatttaaattt 841

                                                                       
Query: 125 taaaatataaaaatccgatagtgttctcctggaagagccgtttaaagcttagcattaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 taaaatataaaaatccgatagtgttctcctggaagagccgtttaaagcttagcattaaga 781

                                                                       
Query: 185 tggagatttattcacaaatcccattaaaatgaaattccaaacaagtttctcggaaaggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tggagatttattcacaaatcccattaaaatgaaattccaaacaagtttctcggaaaggta 721

                                                                       
Query: 245 tttttaagtgtgcagtttcagaggggacatgatggaatggatggcaggaactataaaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tttttaagtgtgcagtttcagaggggacatgatggaatggatggcaggaactataaaccc 661

                                                                       
Query: 305 aggaactttcatggcaagtcctggtgaaatgggatggggagtgggcaggggggaggcacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aggaactttcatggcaagtcctggtgaaatgggatggggagtgggcaggggggaggcacc 601

                                                                       
Query: 365 tttgcatgctccttgggctttggtggcccaaattcagcaacatagtcctatctaagctgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tttgcatgctccttgggctttggtggcccaaattcagcaacatagtcctatctaagctgg 541

                                                                       
Query: 425 cactgcctgtgaaggctaggaagcctgtgaacgaccctgtagaatttcagagtaactttc 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cactgcctgtgaa-gctaggaagcctgtgaacgaccctgtagaatttcagagtaactttc 482

                                                                       
Query: 485 cttgggataaaaacacctcctccgtaagcaaacaggggtggggttgggggtgggaccaga 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 481 cttgggataaaaacacctcctccgtaagcaaacaggggtgggg-tgggggtgggaccaga 423

                                                                       
Query: 545 cattgtacaagccttctctagatttgacagacacctcattttctaaagcgcggctccccc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cattgtacaagccttctctagatttgacagacacctcattttctaaagcgcggctccccc 363

                                   
Query: 605 aggcggtgcacggacttaatgttg 628
           |||||| |||||||||||||||||
Sbjct: 362 aggcggggcacggacttaatgttg 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1026
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1016
Effective search space:   627888
Effective search space used:   627888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)