BAC Information

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BAC

Clone NameMSMg01-517E07
Chromosome4 (Build37)
Map Location 15,994,855 - 15,995,314
singlet/doubletsinglet
Overlap genenone
Upstream geneEfcbp1, Tmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2
Downstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517E07.T7 (MSMg01no517_e07.b1)MSMg01-517E07.TJ (MSMg01no517_e07.g1)
ACCAG589060AG589061
length765775
length of high quality
(start - end)
451 (55 - 505)442 (69 - 510)
definitionCHROMAT_FILE: MSMg01no517_e07.b1 PHD_FILE: MSMg01no517_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:17 2005CHROMAT_FILE: MSMg01no517_e07.g1 PHD_FILE: MSMg01no517_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGGGGGCGCTATACGACTTCCTATCCGGAGAGGATCCGCGGAATTCCA
CAGTCTTAAGAGACTTTCATGGACTTTAAAGAGAACTATATTTTAGCGTC
AGCATGTTGAACTTTGACCCTTGCAATTTTGATATCCTTTAGTTACCATA
CATACAGCATCTTTGTGTCTTGTCTTCTATCTACCCCTTTTGATTTACTT
GAATCTTCTGCAATAGACTTAAGGGTTCCGATTTTTCTCTCATCTTTCCT
TTTAACCTTTGGAAAAATCTAGTCATGCTTATCTTGGAATGAAATCTTAT
TTTACCAAACAAAACCCTTCAGTCTTAAAAAACTATTTTCTTTTCTTTTT
AATTTGCCTTACCGAAAAAACCCAAAATGCATCTGCTTATATTCTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTACTTAAAGACAGGGTTTCTTTGTATAACCCTGGCTATCCTGGAA
CTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAACGCACCTGCCTCT
GCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCAGCTTTA
TATTCTTATATTGTCTCCTCTATCTATCTTTCCTACACAGTGGTTTCTCT
TTGGTTTATTTCTCCCCTTAAGGNAANAAGACACAGTAATAAAATAATAA
GTTTATCAACTTCCTGCACAAGAGTTGAATCTAAATCTACTTGACACCAT
GCCAAGAAGTAAGAT
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTGGACAACCAGATCTTTCTACAGCAAAGC
TTTTATTGCTTACTTCTCAGGAAGACCCCGAACCCAGAAAATGGTGCTGC
TTATATAGCCCGCAGCGTGACGTTTCAGCACCTGATGTGGCGTGACAGCA
CCTGATTAGTTGCTCGCCCATCACCCCATTACTACGCCCCGAGATGGGCA
GTAACTGGGCGTGAATTCACTCTTGCACTTGCACATAAGGCTTGTTTACT
AGTTAGGCGCAGTGGAAGCCAGCGCCATCTTATAATGGCGATTGCTCACG
GCACGGCTCTCCACATCTCCCCCTTTTTATTTTATTAAAATTTGAGGCTA
GTCTAGGCCTCTGCAGTCATGTCCATCTGCTGTGGCTCCTGTCTTAGGTC
ATTCCTCCAATATCACAGCCTTTCCTGTCATAGGGTAACCCTATCGCCAC
TGGGTCCCGTGTCTTAAGTTGGTCTGTACATGAGGAAAGTTGCCCGTCTC
TGGATACCGCAGTACTGTGTGACAGTAACTGCCAAATGACCTAGGGCGAA
CTCTATAAAAGAGGCCAGCCAAAAAACGAATCAGTAAAACTCAGCGAAGT
GCAAATGCTGATCTATGAGCATTGAGTCTCTCTCATTCTAGTGNCATGGA
TCCACAAATCTATGGGACGCTATAACAGAGAACTCTAATGCCATTTTGGT
CTTAAGCATGGACAGCCAAATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_e07.b1 MSMg01no517_e07.b1 CHROMAT_FILE:
MSMg01no517_e07.b1 PHD_FILE: MSMg01no517_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:17 2005
         (451 letters)



>mm_chr4_15994775_15995625
          Length = 851

 Score =  679 bits (351), Expect = 0.0
 Identities = 431/463 (93%), Gaps = 15/463 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaagagactttcatggactttaaagagaactatattttagcgtcagcatgttgaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttaagagactttcatggactttaaagagaactatattttagcgtcagcatgttgaactt 481

                                                                       
Query: 61  tgacccttgcaattttgatatcctttagttaccatacatacagcatctttgtgtcttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgacccttgcaattttgatatcctttagttaccatacatacagcatctttgtgtcttgtc 421

                                                                       
Query: 121 ttctatctaccccttttgatttacttgaatcttctgcaatagacttaagggttccgattt 180
           |||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 420 ttctatctaccctttttgatttacttgaatcttctgcaatagagttaagggttctgattt 361

                                                                       
Query: 181 ttctctcatctttccttttaacctttggaaaaatctagtcatgcttatcttggaatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctctcatctttccttttaacctttggaaaaatctagtcatgcttatcttggaatgaaa 301

                                                                       
Query: 241 tcttattttaccaaacaaaacccttcagtcttaaaaaactattttcttttctttttaatt 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 300 tcttattttaccaaacaaaacccttcagtcttaaaaaagtattttcttttctttttaatt 241

                                                                       
Query: 301 tgccttaccgaaaaaacccaaaatgcatctgcttatattc--ttattta----tttattt 354
           ||||||||||||||||||||||||||||||||||||||||  || ||||    |||||| 
Sbjct: 240 tgccttaccgaaaaaacccaaaatgcatctgcttatattcctttttttaattttttatta 181

                                                                       
Query: 355 attt-atttatttatttatttatttatttatttatttat----ttatttat-ttacttaa 408
           |||| |||||||| ||| ||| ||| ||| ||| ||| |    || ||| | ||  || |
Sbjct: 180 attttatttattt-tttgtttttttgtttttttgtttttgtttttgtttttgtt--ttca 124

                                                      
Query: 409 agacagggtttctttgtataaccctggctatcctggaactcac 451
           |||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 123 agacagcgtttctctgtataaccctggctatcctggaactcac 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)