XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
ACTAACTTTCCCATCCCAACTTTCTTAACTTTCTCTCTCTCTCTCTCTCT
CTTTCTCTCTCTTTCTTTCTTTCCTTCTTTCCTTCTTTCTTGCTCTCTCT
TTCTTTCTTTCTTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTTCTTTCTTTCTTTCTTTCAATTTCAGGTCATTCATACATAT
ACATGGGTCAGACATATGACATATAGTTCATATATAATTATTGAGATTCA
ACTTAATTAGTGTAATTTATGACATTTTCCTTCTCTTTCCTTTCTTCAAA
CCCTCCCATATGCCCTTACCTATCTTTCAAATTCATTGAATCTTCTTATT
TCAGTAATTATTATTCAATTTATATATGTATATTCTTTTACAGTCTATCA
ATAGTTTTCATGATCTATAGAACATTCATTTAGCAAAACTATCTGAAGCA
TGTGTCAAATCTTTGATGACCCTATTACAAACATAATAGGAACTGACCTA
CATGGCTAGAACTCCTCAAGCCAAGAATATAGCCGTGTTCTTTCTTTCTG
GAAATTTATTCTACTGAATCTTTCAAGTGTTATCCATTTGTCAGGGGCTC
TTTCAGACCCTTATGACAATTATTTAATTTTAACTAAATGAGNAAAATTC
ATTTATATTATTATTTTAACATGAGAAAGAAGTATTAAGAGAACTTGTGT
GACTTCCC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTATACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTGAACATAGTACTACCAGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGGAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAACCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGTAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAACCTANGATACCCAAGATATAAGATACAATTTCCTAAACAC
ATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGC

Query= MSMg01no517_p04.b1 MSMg01no517_p04.b1 CHROMAT_FILE:
MSMg01no517_p04.b1 PHD_FILE: MSMg01no517_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:12 2005
         (526 letters)



>mm_chr4_67654516_67655441
          Length = 926

 Score =  893 bits (462), Expect = 0.0
 Identities = 514/546 (94%), Gaps = 28/546 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcactaactttcccatcccaactttcttaactttctctctctctctctctctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaattcttcactaactttcccatcccaactttcttaactttctctctctctctctctctc 244

                                                                       
Query: 65  t---------------------t-tctctctctttctttctttccttctttccttctttc 102
           |                     | ||||||||||||||||||||||||||||||||||||
Sbjct: 245 tctctctctctctctctctctctctctctctctttctttctttccttctttccttctttc 304

                                                                       
Query: 103 ttg--ctctctctttctttctttctttcttcctctctctctctctctctctctctctctc 160
           |||  |||||||||||||||||||||||||  ||| || |||||||||||||||||||||
Sbjct: 305 ttgctctctctctttctttctttctttctt--tct-tc-ctctctctctctctctctctc 360

                                                                       
Query: 161 tctctctctctttctttctttctttctttcaatttcaggtcattcatacatatacatggg 220
           ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 tctttctttctttctttctttctttctttcaatttcaggtcattcatacatatacacggg 420

                                                                       
Query: 221 tcagacatatgacatatagttcatatataattattgagattcaacttaattagtgtaatt 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcagacatatgacatatagttcatatataattattgagattcaacttaattagtgtaatt 480

                                                                       
Query: 281 tatgacattttccttctctttcctttcttcaaaccctcccatatgcccttacctatcttt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatgacattttccttctctttcctttcttcaaaccctcccatatgcccttacctatcttt 540

                                                                       
Query: 341 caaattcattgaatcttcttatttcagtaattattattcaatttatatatgtatattctt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaattcattgaatcttcttatttcagtaattattattcaatttatatatgtatattctt 600

                                                                       
Query: 401 ttacagtctatcaatagttttcatgatctatagaacattcatttagcaaaactatctgaa 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttacagtctatcaatagttttcatgatctatagaacattcatttagcaaaactatctgaa 660

                                                                       
Query: 461 gcatgtgtcaaatctttgatgaccctattacaaacataataggaactgacctacatggct 520
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 661 gcatgtgtcaaatctttgatgaccctattacaaacataataggaactgacatacatggct 720

                 
Query: 521 agaact 526
           ||||||
Sbjct: 721 agaact 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)