NTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTGTTGACGGTGTCTTTTGCCTTGTAGAATCTTTGGAGTTTCA
TTAGGTCCCATTTGTCAACCTAGGATAGCAAAAACTCTTCTCAAGGATAA
AAGAACCTCTGGTGGAATTACCATGCCTGACCTAAAGCTTTACTACAGAG
CAATTGTGATAAAAATTGCATGGTACTGGTATAGAGACAGACAAGTAGAC
CAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGACA
CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCA
TTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG
CGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT
CAAGGAACTTCACTTAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG
TGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGA
ACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTA

NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACAGCCAGGGTTATACAGAG
AAACCCTGTCTCGAAAAAAAAAAAGAACTTCTAGCTCCTCCTGCACCATG
CCTGCCTGGAAGCTGCCATGCTCCCACGTTGATTGTAATGGACTGAACCT
CTGAATCTGTAAGCCATCCCCAATTAAATGAATTTTATAAGACTTGCCTT
GGTCATAGTGTCTGTTCACAGCAGTAAAACTCTAAGACTGTATGTCTGTG
TGTGTGTGTGTATATAGTTTTCTACACTCCAGTTGTTATTCCCCTTCCAG
TTTAATCTCCAACAGTTCCTTATGTAACTCCTTCTCCCTCATGTCTTGAA
GAGGATGTCCTTACCACCCACCACCATCCTGCCAGGTCTTCTCACTCCCT
GGGGCCTCAATTCTTAGCCCAGACAAGGCTAAGCATATGGGTCTTTGGTA
GAGTGCATGTTTCACAAGACCTAGATTCAATACTCAGAAGCAAATGGGTA
AAACAAAGAACAATTGGAAGGTAAACATGAGTATGAGGAACCTCAGTGTT
GCACAGATGGACATATCTTTCCCAGTATGGAGGGTTTCTGCTTCATATGG
TTCACAGCGAGACAAGACAAATGGTGCTTTTTCTCCCTCCACAGCCCACT
CAACACCATGCAGTAGTTTCAGTGCTAGCCAACAGCACTGGATTTTTCAA
CN

Query= MSMg01no518_c15.g1 MSMg01no518_c15.g1 CHROMAT_FILE:
MSMg01no518_c15.g1 PHD_FILE: MSMg01no518_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:29 2005
         (676 letters)



>mm_chr4_18003015_18004090
          Length = 1076

 Score =  882 bits (456), Expect = 0.0
 Identities = 641/802 (79%), Gaps = 154/802 (19%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagccagggttatacagagaaaccctgtctc----------------gaaaaaaa 44
           ||||||||||||||||||||||| ||||||||||||                 |||||||
Sbjct: 101 cagaacagccagggttatacagaaaaaccctgtctcaaaaaatccaaaaaaaaaaaaaaa 160

                                                                       
Query: 45  aaaagaacttctagctcctcctgcaccatgcctgcctggaagctgccatgctcccacgtt 104
           ||||||||| ||||||||||||||||||||||||||||                      
Sbjct: 161 aaaagaactcctagctcctcctgcaccatgcctgcctg---------------------- 198

                                                                       
Query: 105 gattgtaatggactgaacctctgaatctgtaagccatccccaattaaatgaattttataa 164
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ----gtaatggactgaacctctgaatctgtaagccatccccaattaaatgaattttataa 254

                                                                       
Query: 165 gacttgccttggtcatagtgtctgttcacagcagtaaaactctaagactgta-------- 216
           ||| |||||||||||||||||||||||||||||||||||| |||||||||||        
Sbjct: 255 gacgtgccttggtcatagtgtctgttcacagcagtaaaaccctaagactgtatgtatgta 314

                                                                       
Query: 216 ------------------------------------------------------------ 216
                                                                       
Sbjct: 315 tgtatgtatgtatgtatgtatatatatatatatatatatatatatatatgtgtgtgtgtg 374

                                                                       
Query: 217 --------------tgtctgtgtgtgtgtgtgtat------------------------- 237
                         ||| |||||||||||||||||                         
Sbjct: 375 tgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtatatatatatatgtatatatatatata 434

                                                                       
Query: 238 ----atagttttctacactccagttgttattccccttccagtttaatctccaacagttcc 293
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aataatagttttctacactccagttgttattccccttccagtttaatctccaacagttcc 494

                                                                       
Query: 294 ttatgtaactccttctccctcatgtcttgaagaggatgtccttaccacccaccaccatcc 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttatgtaactccttctccctcatgtcttgaagaggatgtccttaccacccaccaccatcc 554

                                                                       
Query: 354 tgccaggtcttctcactccctggggcctcaattcttagcccagacaaggctaagcatatg 413
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 555 tgccaggtcttctcactccct-gggcctcaattcttagcccagacatggctaagcatatg 613

                                                                       
Query: 414 ggtctttggtagagtgcatgtttcacaagacctagattcaatactcagaagcaaatgggt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggtctttggtagagtgcatgtttcacaagacctagattcaatactcagaagcaaatgggt 673

                                                                       
Query: 474 aaaacaaagaacaattggaaggtaaacatgagtatgaggaacctcagtgttgcacagatg 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aaaacaaagaacaattggaaggtaaacatgagtatgaggaacctcagtgttgcacagatg 733

                                                                       
Query: 534 gacatatctttcccagtatggagggtttctgcttcatatggttcacagcgagacaagaca 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gacatatctttcccagtatggagggtttctgcttcatatggttcacagcgagacaagaca 793

                                                                       
Query: 594 aatggtgctttttctccctccacagcccactcaacaccatgcagtagtttcagtgctagc 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aatggtgctttttctccctccacagcccactcaacaccatgcagtagtttcagtgctagc 853

                                 
Query: 654 caacagcactggatttttcaac 675
           ||||||||||||||||||||||
Sbjct: 854 caacagcactggatttttcaac 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)