Query= MSMg01no518_m21.b1 MSMg01no518_m21.b1 CHROMAT_FILE:
MSMg01no518_m21.b1 PHD_FILE: MSMg01no518_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:19 2005
(588 letters)
>mm_chr4_136524504_136525491
Length = 988
Score = 1091 bits (564), Expect = 0.0
Identities = 577/582 (99%), Gaps = 4/582 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgacacttc-c-gcccggaaggagtgtgctcatttcaaaagccacagggggct 62
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgacac--cacagcccggaaggagtgtgctcatttcaaaagccacagggggct 262
Query: 63 gggggaccggtcaaggtgaactgcagccgattatggtgtctgcagagccctcccatggct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gggggaccggtcaaggtgaactgcagccgattatggtgtctgcagagccctcccatggct 322
Query: 123 gaatacaagacaagaatgaagtccggaaaagtattaccggctctgtgcctgggtctcaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaatacaagacaagaatgaagtccggaaaagtattaccggctctgtgcctgggtctcaga 382
Query: 183 gggcccagctgaaggccttgcaacgaataacgacagtgtcttgagccagagttggtttag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggcccagctgaaggccttgcaacgaataacgacagtgtcttgagccagagttggtttag 442
Query: 243 tgaccttggcaaggcagggctagtgggtgccacaccctcctctgtggcaatggtgtctga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgaccttggcaaggcagggctagtgggtgccacaccctcctctgtggcaatggtgtctga 502
Query: 303 acgtgagcctggagatcaggccaaccttgccacaagattctgctgttctgctgatcgtca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acgtgagcctggagatcaggccaaccttgccacaagattctgctgttctgctgatcgtca 562
Query: 363 gccgtgggccagcctctcgggatacctgcttcttcccctgacacctatgctgcctgctcg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gccgtgggccagcctctcgggatacctgcttcttcccctgacacctatgctgcctgctcg 622
Query: 423 gagaatggctgagaggatcaagccggtgacagatgtggcgggccacgtggtgagggggat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagaatggctgagaggatcaagccggtgacagatgtggcgggccacgtggtgagggggat 682
Query: 483 tcactcagcaagcatttcctggacacctgcaccaggccagctgtggggacccagcagtaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcactcagcaagcatttcctggacacctgcaccaggccagctgtggggacccagcagtaa 742
Query: 543 gcacagctggtcaggtccctgtgctgatatgggaaggggggg 584
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 743 gcacagctggtcaggtccctgtgctgatatggggaggggggg 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_m21.g1 MSMg01no518_m21.g1 CHROMAT_FILE:
MSMg01no518_m21.g1 PHD_FILE: MSMg01no518_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:19 2005
(609 letters)
>mm_chr4_136710496_136711504
Length = 1009
Score = 1178 bits (609), Expect = 0.0
Identities = 609/609 (100%)
Strand = Plus / Minus
Query: 1 aactcaacccaacggtttcccaggactcctagggacagagaaatggccgctggtatagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aactcaacccaacggtttcccaggactcctagggacagagaaatggccgctggtatagaa 582
Query: 61 acctccacagagatggagctttcccaggtggtccttcaaactgtcctggccattagatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 acctccacagagatggagctttcccaggtggtccttcaaactgtcctggccattagatga 522
Query: 121 tccttccagacaccaaagagtggggcatggactatctattgtgtggggagggttggagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tccttccagacaccaaagagtggggcatggactatctattgtgtggggagggttggagga 462
Query: 181 agtcacagaagctgtggataaccctgggattggatgatgagagtgggtattcattgtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agtcacagaagctgtggataaccctgggattggatgatgagagtgggtattcattgtgat 402
Query: 241 gggcatctgccatggccaactgctatgcagaagtctgggaagtcagggcaacatctgggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gggcatctgccatggccaactgctatgcagaagtctgggaagtcagggcaacatctgggg 342
Query: 301 aagaggtacccgcatgtctatagctgatgtgggaaggaggggtgagaaaggcgacctctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aagaggtacccgcatgtctatagctgatgtgggaaggaggggtgagaaaggcgacctctg 282
Query: 361 aaacctcatctgggggctgatgagccccaacaacagtgagctgtggtcttctaaactcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aaacctcatctgggggctgatgagccccaacaacagtgagctgtggtcttctaaactcca 222
Query: 421 gaggaaagcaccgtgtttagattttggagacaggattgtgtgatgtagcccaggctgacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gaggaaagcaccgtgtttagattttggagacaggattgtgtgatgtagcccaggctgacc 162
Query: 481 ccaaattccagatacttctgcctcagcctctggggtactctggatcacaagcatgtgtcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ccaaattccagatacttctgcctcagcctctggggtactctggatcacaagcatgtgtcc 102
Query: 541 accccctggggcaggaaacattttctaccttagtttgtgtcactctgtggaggtcacatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 accccctggggcaggaaacattttctaccttagtttgtgtcactctgtggaggtcacatc 42
Query: 601 tttggcaca 609
|||||||||
Sbjct: 41 tttggcaca 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
