Query= MSMg01no518_p16.b1 MSMg01no518_p16.b1 CHROMAT_FILE:
MSMg01no518_p16.b1 PHD_FILE: MSMg01no518_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:33 2005
(692 letters)
>mm_chr4_100700407_100701498
Length = 1092
Score = 1284 bits (664), Expect = 0.0
Identities = 682/688 (99%)
Strand = Plus / Minus
Query: 5 gaattcagcacccaggcagagccaatgttctggttcaggtctaaaggcagaaacaaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gaattcagcacccaggcagagccaatgttctggttcaggtctaaaggcagaaacaaaaca 899
Query: 65 atcttgttcaaatgtggtcatgaaggaagaattcactctgtcttcaagagttgatctatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 atcttgttcaaatgtggtcatgaaggaagaattcactctgtcttcaagagttgatctatc 839
Query: 125 caggttttcaaccaaaaatgccctcacagatatacatccagtatataacatttggtcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 caggttttcaaccaaaaatgccctcacagatatacatccagtatataacatttggtcaat 779
Query: 185 atctgggtaccctaaagtccagataagctgataaataaaattaaccactgaagcctccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atctgggtaccctaaagtccagataagctgataaataaaattaaccactgaagcctccct 719
Query: 245 acatgctccacctccctataagggaacagtataacatttcacttacggttctaatttttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acatgctccacctccctataagggaacagtataacatttcacttacggttctaatttttt 659
Query: 305 aacttgtgactatatgacagcagtaagtgaatcctggctgtccttgttcataccagcctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aacttgtgactatatgacagcagtaagtgaatcctggctgtccttgttcataccagcctt 599
Query: 365 gggtgtcaacccactcatcctacaacactgaagtctgcctgcgccattaggccttggtag 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gggtgtcaacccactcatcctgcaacactgaagtctgcctgcgccattaggccttggtag 539
Query: 425 ataccggcattgtggtctgtacattttactaatcagggcatctggaaagagtagaggcag 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 538 ataccggcattgtggtctgtacattttactaaccagggcatctggaaagagtagaggcag 479
Query: 485 cagcctgtagaggaagcagagtagaacccctgctgcctgagctctccattaaggatcagg 544
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 478 cagcctgtagaggaagcacagtagaacccctgctgcctgacctctccattaaggatcagg 419
Query: 545 gatcccggatttgaggtccagccatgccatcctctagctaggtggccttgagcaaaacct 604
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggtcctggatttgaggtccagccatgccatcctctagctaggtggccttgagcaaaacct 359
Query: 605 ctttgaaatgtcatcctgtttcccttatttatacaactgtggatgaaatctccaaattgg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctttgaaatgtcatcctgtttcccttatttatacaactgtggatgaaatctccaaattgg 299
Query: 665 tcctagctctaacacttaattatggaat 692
||||||||||||||||||||||||||||
Sbjct: 298 tcctagctctaacacttaattatggaat 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_p16.g1 MSMg01no518_p16.g1 CHROMAT_FILE:
MSMg01no518_p16.g1 PHD_FILE: MSMg01no518_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:33 2005
(649 letters)
>mm_chr4_100565626_100566674
Length = 1049
Score = 1031 bits (533), Expect = 0.0
Identities = 595/649 (91%), Gaps = 52/649 (8%)
Strand = Plus / Plus
Query: 1 tttgttcagctctgagccccatttttaatggggttatttgattttctggagtccaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttcagctctgagccccatttttaatggggttatttgattttctggagtccaccttc 260
Query: 61 ttgaattctttatgtatattggatattagtcccctatccgatttgggataggtaaagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaattctttatgtatattggatattagtcccctatccgatttgggataggtaaagatc 320
Query: 121 ctttcccaatctgttggtggcctttttgtcttataagtcactttttcaatgttgtgaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcccaatctgttggtggcctttttgtcttataagtcactttttcaatgttgtgaagt 380
Query: 181 ggtaggaactcagaaatcttccttcagagcccaaacttctgtgtagtagaacttacaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaggaactcagaaatcttccttcagagcccaaacttctgtgtagtagaacttacaatg 440
Query: 241 aacctctccaccctacacataccttttcttttcctagagggtctcatattgtgttttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctctccaccctacacataccttttcttttcctagagggtctcatattgtgttttcca 500
Query: 301 ggccagatgttttaagtacaaccctctagaaaaggaaaaggtatgggtggtgagggaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ggccagatgttttaagtacaaccctctagaaaaggaaaaggtatgggtggtaagggaact 560
Query: 361 tcataaaccagtcaacaattgttggcatttaattctttctttctttctttctttctttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcataaaccagtcaacaattgttggcatttaattctttctttctttctttctttctttct 620
Query: 421 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctttctttctttctttctttctttctttctttctttctttctttctttctt------- 673
Query: 481 ttctttctttctttctttctttcttccttccttccttccttccttccttccttccttcct 540
|||||||||||||||||||||||||||
Sbjct: 674 ---------------------------------ccttccttccttccttccttccttcct 700
Query: 541 tcctttctttctttctttctttctttctttctttctttctttcaagaatgcagcttggag 600
||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 701 tcctttctttctttctttctttctttctttc------------aagaatgcagcttgggg 748
Query: 601 aaggaggtgtatatatatcctgttaatttggcccctgccaggctctagg 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aaggaggtgtatatatatcctgttaatttggcccctgccaggctctagg 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 181
Number of extensions: 65
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
