Query= MSMg01no519_j15.b1 MSMg01no519_j15.b1 CHROMAT_FILE:
MSMg01no519_j15.b1 PHD_FILE: MSMg01no519_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:21 2005
(610 letters)
>mm_chr4_91107665_91108678
Length = 1014
Score = 1123 bits (581), Expect = 0.0
Identities = 603/611 (98%), Gaps = 4/611 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgcttcccttctagcaagaggctgtggctggattccagaggactgggcttct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ggaattcttgcttcccttctagcaagaggctgtggctggattccagaggactgggcttct 755
Query: 64 ttctcttgtcttatatccccaagaatcttccctgtgtttctatcctgcctcaaaatgata 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 754 ttctcttgtcttatatccccaagaatcttccctgtctttctatcctgcctcaaaatgata 695
Query: 124 tgtgtatcctaaaccaaattagatcccaggaaatttg-cttggttccaagaggggaatca 182
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 694 tgtgtatcctaaaacaaattagatcccaggaaatttgccttggttccaagaggggaatca 635
Query: 183 tggaaataatggtgaattctatctgaatatctttgatatgctcaacctgttcagtggaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tggaaataatggtgaattctatctgaatatctttgatatgctcaacctgttcagtggaga 575
Query: 243 tcaaaaccaaggaacacagaagcatctataactagaggtaagagtgagatggtagagtag 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 574 tcaaaaccaaggaacacagaagcatctataactagaggtaagagtgagatggtagaatag 515
Query: 303 taggattccactgttttatgtaaggccagctgaggagcagcaactagtagtgtaagattc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 taggattccactgttttatgtaaggccagctgaggagcagcaactagtagtgtaagattc 455
Query: 363 aagggagaagttagttcccttgaagac--atacccatggcagggaactgcaaaggaccta 420
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 454 aagggagaagttagttcccttgaagacatatacccatggcagggaactgcaaaggaccta 395
Query: 421 agtatgtaagctgaaagtgagaatcacataggcattcaagggtattcctacagtccagtt 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 394 agtatgtaagctgaaagtgagaatcacataggcattcaagggtattcttacagtccagtt 335
Query: 481 ttaaggtaagggattgagattgactaatt-aaaaaaaaatgtccttactgcatagccaac 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 334 ttaaggtaagggattgagattgactaattaaaaaaaaaatgtccttactgcatagccaac 275
Query: 540 actaacaagtttgaaaactgaaatctgtacaacaggttggccagctggaaatgcaaattt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actaacaagtttgaaaactgaaatctgtacaacaggttggccagctggaaatgcaaattt 215
Query: 600 gacaatgcaga 610
|||||||||||
Sbjct: 214 gacaatgcaga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1014
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1004
Effective search space: 602400
Effective search space used: 602400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_j15.g1 MSMg01no519_j15.g1 CHROMAT_FILE:
MSMg01no519_j15.g1 PHD_FILE: MSMg01no519_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:22 2005
(611 letters)
>mm_chr4_90952963_90953972
Length = 1010
Score = 1069 bits (553), Expect = 0.0
Identities = 596/615 (96%), Gaps = 9/615 (1%)
Strand = Plus / Plus
Query: 5 acttccctagggaaacaacttgatggacagttatacagctattctcacaggagtactgag 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 197 acttccctagggaaacaacttgatggacagttaaacagctattctcacaggagtactgag 256
Query: 65 ctctctggactagcaccacactccagccaagttgtacatgtc--------tttttttggc 116
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 257 ctctctggactagcaccacactccagccaagttgtacatgtcttttttttttttttttgc 316
Query: 117 atgctttttaactgaacatacatgccacagtaaagtattgctgcctttcttcacaagaga 176
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 317 atgctttttaactgaacatacatgccacaggaaagtattgctgccttccttcacaagaga 376
Query: 177 tagaaaaccatgtctaaaacacaactgacataagagcagttttgaacacgctgctcaaac 236
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct: 377 tagaaaaccatgtctaaaatacaactgacacaaaagcagttttgaacacgctgctcaaac 436
Query: 237 catggtcaatggccaagagcacagaactgaaacaccccagcaggccctagcaggaagagg 296
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catggtcaatggctaagagcacagaactgaaacaccccagcaggccctagcaggaagagg 496
Query: 297 ggactatgcaaatagtgttgggggtcagaggaagaaaagctaaacaggaaaagaatctgt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggactatgcaaatagtgttgggggtcagaggaagaaaagctaaacaggaaaagaatctgt 556
Query: 357 tagtgttgaagtgacactgtgggaacacagtaaatgccaatttatcccaaaccgtgtaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tagtgttgaagtgacactgtgggaacacagtaaatgccaatttatcccaaaccgtgtaat 616
Query: 417 tcagggcatcagccactccctagccacctacattgcttttaacagcatactttaattaaa 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcagggcattagccactccctagccacctacattgcttttaacagcatactttaattaaa 676
Query: 477 aacttaattgcatattttaattaaaaatacacaatcttctggacctgtttcattgaaagg 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 677 aacttaattgcatattttaattaaaaatacacaatcttctggacctgtttcattcaaagg 736
Query: 537 tcattttatttaggtttttttttcccttccctatttgaaattactaccagtgtacaaaat 596
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcattttatttag-tttttttttcccttccctatttgaaattactaccagtgtacaaaat 795
Query: 597 atcaaattaacccct 611
|||||||||||||||
Sbjct: 796 atcaaattaacccct 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
