BAC Information

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BAC

Clone NameMSMg01-519O06
Chromosome4 (Build37)
Map Location 150,155,823 - 150,332,896
singlet/doubletdoublet
Overlap geneLOC677027, Errfi1, Park7, Tnfrsf9
Upstream geneSpsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1
Downstream geneUts2, Per3, Vamp3, Camta1, LOC100041960, Dnajc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519O06.T7 (MSMg01no519_o06.b1)MSMg01-519O06.TJ (MSMg01no519_o06.g1)
ACCAG591054AG591055
length732778
length of high quality
(start - end)		634 (42 - 675)136 (71 - 206)
definitionCHROMAT_FILE: MSMg01no519_o06.b1 PHD_FILE: MSMg01no519_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:45 2005CHROMAT_FILE: MSMg01no519_o06.g1 PHD_FILE: MSMg01no519_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,332,266 - 150,332,896)(150,155,823 - 150,155,954)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGATTAGCGTATCTGATACCTGGATGTTTAGTCTGTAAGGGCACCTCCT
GTTTTCATTTCCAGGAAGCATGGCACAGGCGGCTGAACTAGTCAGAGATG
GAGCTGGAGAGGGCAGCAGCAGCTTCGTCAGCAGTCTCTGGGTATGTGCC
GGATGGACGCACACAGCCAGCCCTTCCTCAGACTGTCAAGCTTGCTGGGA
AGTGCCTTTACCTTCTGATGTCTCAGCAGCCATAGAATTTGCTCCTCAAC
TCTCTTACTACTCCCACAAGGTAGGCAAGCGAACATAGAAACTCTTCAAA
TTTCCCCACCTTGAGCACAGCTTGGACAAAAATACTAAAGTACTATCAAC
ACCAGGAACCAAACGCAACACTGCTATCAACCCAGCACCAAACCCCTGAT
TCCAACGCTCACGCTAACCCACACCCTAAACCTAATGCCTACCGACACCA
ACCCACCACCAATGCTACCAACCCAGGGACCCCAGGTTAATTATCAGTAC
TGGTGCCAAAAAGCCACCAAACCTGCGAGCCCAACAGCAATACCAAAATC
CAGGAGCAGGATGGACGTGGATAACAGGACTTTCTGGGGCAAGTGTGCCA
AACCCAGGGAGCCACATTGCGCCAGGGAAGCCTGGTCAAGGCTCACACGT
GTGCAGGATCTATAGACATTTACAGAGCCGTA

AAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGCAACCAGATGAGATAGCTTCCGAGT
CCGAGCCATGGTCAATTTTCTCCTACTTTCTGTGTGCCTCCGGCTTGGGC
TGCTGAGCAGGACAGGAGCTGAGCCTTGTTAAACAACAACAACCAAATCC
TATGGAGGACACTGGCTTTAGACGGGGCNTTTCTAAAGGGCAGACCCGAA
ACCAAAATGGAGGTCGCTTTGAAGTCAAACTGGCCATTCCCCCTTAAAAA
CCCGGGTCCAGGGGTTTTTCCGGGGTAAATTCCCCGGGGGGGAAAAGCTT
TTTTGTCTTTGACTCCCCCCCCTTATTGGGGTGGTGTTCTTTAACCATTT
ACATATTTTTTCCCCCCCGCGCGTTTTTTATAAAACCCTTGTGTCAAAAA
TAATTTTCCCCCCCCCCCCCCCCCCGTGTGGGTATAAAAAAAAAATTCGT
GCGGGTGTTTNNNNNTNNNNNNNNTNTTNNNTTAGAGATCGCCCCCCCGC
CCCTTCATGAATGGGGTGGTTTTTTTTATAACCCCCCCCAGGCCATTAAC
ATATATAAATACCCTCTCCACCCCACCATTAAGAACGGGGCGCNNNNNTT
ATTGGNNAGGAAACTTTTTCCCTTACTTGTGTGTATGATATGAGTCCTGC
AACGCTCAATCTATGATAGGGGAAAGACCTAGCNCCTCTTATTCTTTCTT
TAGTTTTTCCTTGAAGATATCATTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_o06.b1 MSMg01no519_o06.b1 CHROMAT_FILE:
MSMg01no519_o06.b1 PHD_FILE: MSMg01no519_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:45 2005
         (634 letters)



>mm_chr4_150332063_150333096
          Length = 1034

 Score = 1205 bits (623), Expect = 0.0
 Identities = 629/631 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgattagcgtatctgatacctggatgtttagtctgtaagggcacctcctgttt 63
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ggaattctgagaagcgtatctgatacctggatgtttagtctgtaagggcacctcctgttt 775

                                                                       
Query: 64  tcatttccaggaagcatggcacaggcggctgaactagtcagagatggagctggagagggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tcatttccaggaagcatggcacaggcggctgaactagtcagagatggagctggagagggc 715

                                                                       
Query: 124 agcagcagcttcgtcagcagtctctgggtatgtgccggatggacgcacacagccagccct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agcagcagcttcgtcagcagtctctgggtatgtgccggatggacgcacacagccagccct 655

                                                                       
Query: 184 tcctcagactgtcaagcttgctgggaagtgcctttaccttctgatgtctcagcagccata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tcctcagactgtcaagcttgctgggaagtgcctttaccttctgatgtctcagcagccata 595

                                                                       
Query: 244 gaatttgctcctcaactctcttactactcccacaaggtaggcaagcgaacatagaaactc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gaatttgctcctcaactctcttactactcccacaaggtaggcaagcgaacatagaaactc 535

                                                                       
Query: 304 ttcaaatttccccaccttgagcacagcttggacaaaaatactaaagtactatcaacacca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttcaaatttccccaccttgagcacagcttggacaaaaatactaaagtactatcaacacca 475

                                                                       
Query: 364 ggaaccaaacgcaacactgctatcaacccagcaccaaacccctgattccaacgctcacgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggaaccaaacgcaacactgctatcaacccagcaccaaacccctgattccaacgctcacgc 415

                                                                       
Query: 424 taacccacaccctaaacctaatgcctaccgacaccaacccaccaccaatgctaccaaccc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taacccacaccctaaacctaatgcctaccgacaccaacccaccaccaatgctaccaaccc 355

                                                                       
Query: 484 agggaccccaggttaattatcagtactggtgccaaaaagccaccaaacctgcgagcccaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agggaccccaggttaattatcagtactggtgccaaaaagccaccaaacctgcgagcccaa 295

                                                                       
Query: 544 cagcaataccaaaatccaggagcaggatggacgtggataacaggactttctggggcaagt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cagcaataccaaaatccaggagcaggatggacgtggataacaggactttctggggcaagt 235

                                          
Query: 604 gtgccaaacccagggagccacattgcgccag 634
           |||||||||||||||||||||||||||||||
Sbjct: 234 gtgccaaacccagggagccacattgcgccag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_o06.g1 MSMg01no519_o06.g1 CHROMAT_FILE:
MSMg01no519_o06.g1 PHD_FILE: MSMg01no519_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:45 2005
         (136 letters)



>mm_chr4_150155623_150156158
          Length = 536

 Score =  240 bits (124), Expect = 3e-68
 Identities = 130/132 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggcaaccagatgagatagcttccgagtccgagccatggtcaattttctcctactttc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggcaaccggatgagatagcttccgagtccgagccatggtcaattttctcctactttc 260

                                                                       
Query: 61  tgtgtgcctccggcttgggctgctgagcaggacaggagctgagccttgttaaacaacaac 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tgtgtgcctccggcttgggctgctgagcaggacaggagctgggccttgttaaacaacaac 320

                       
Query: 121 aaccaaatccta 132
           ||||||||||||
Sbjct: 321 aaccaaatccta 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 536
Length adjustment: 8
Effective length of query: 128
Effective length of database: 528
Effective search space:    67584
Effective search space used:    67584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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