Query= MSMg01no519_p24.b1 MSMg01no519_p24.b1 CHROMAT_FILE:
MSMg01no519_p24.b1 PHD_FILE: MSMg01no519_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:54 2005
(562 letters)
>mm_chr4_107682480_107683441
Length = 962
Score = 988 bits (511), Expect = 0.0
Identities = 547/559 (97%), Gaps = 2/559 (0%)
Strand = Plus / Minus
Query: 5 gaattctgggacttcc-gtcgcacagctggcgcagattattggggtaccctagcatacca 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattctgggac-accagtcgcacagctggcgcagattattggggtaccctagcatacca 704
Query: 64 tacataacaatcccccaccctgctgccctcagcaaaggatgaggctgggtggggacctga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tacataacaatcccccaccctgctgccctcagcaaaggatgaggctgggtggggacctga 644
Query: 124 acagagaactcacagtgcccagtctacagctatgatgaggttgatgtcatcggtcggcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acagagaactcacagtgcccagtctacagctatgatgaggttgatgtcatcggtcggcag 584
Query: 184 tcccacagaagtgagcacgatgaccatggtgacgagccccgcctgggggatgccagccgc 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcccacagaggtgagcacgatgaccatggtgacgagccccgcctgggggatgccagccgc 524
Query: 244 cccaatgctggctgctgtggccgtgatgctgcagagggagaaggatgtgacagggatacc 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cccaatgctggctgccgtggccgtgatgctgcagagggagaaggatgtgacagggatacc 464
Query: 304 cgccacagccctggctccaaggagaccaggatgctagaggctggggccagccaagggtgt 363
| ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 463 caccatagccctggcttcaaggagaccaggatgctagaggatggggccagccaagggtgt 404
Query: 364 gggggctctgtcgtgatatcccattggggagttctcagagaagcaggtccctgctcatag 423
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 403 gggggctctgtcgtgatatcccattggggggttctcagagaagcaggtccctgctcatag 344
Query: 424 tcctttggacctgtgggtcccccattcccatccatgagagaactgcaagaagttggaaat 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 343 tcctttggacctgtgggtcccccattcccatccatgagagaactgcaagaagttagaaat 284
Query: 484 ttgcctctgtggaatagagacattcggagattctggtagtcttccagcacagttccatcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 283 ttgcctctgtggaatagagacattcggagattctggtagtcttccagcacagttccaccc 224
Query: 544 tagcctgtcctgcatgcag 562
|||||||||||||||||||
Sbjct: 223 tagcctgtcctgcatgcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_p24.g1 MSMg01no519_p24.g1 CHROMAT_FILE:
MSMg01no519_p24.g1 PHD_FILE: MSMg01no519_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:54 2005
(564 letters)
>mm_chr4_107490721_107491684
Length = 964
Score = 975 bits (504), Expect = 0.0
Identities = 546/566 (96%), Gaps = 11/566 (1%)
Strand = Plus / Plus
Query: 1 ttagcttgcagagcttctgagatgagccttgctccttcattatgcagttctgagctctca 60
||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct: 201 ttagcttgcagagcttctgaggtgagccttgctccttcgttatgcagtcctgagctctca 260
Query: 61 gaatgttctttctgtttgtcctgaggcctcaggcagcccaggcttccttggggtccacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgttctttctgtttgtcctgaggcctcaggcagcccaggcttccttggggtccacca 320
Query: 121 aggcctctggctggtcttcctgacttagagcatttctgtgaacactgagactcccctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcctctggctggtcttcctgacttagagcatttctgtgaacactgagactcccctgag 380
Query: 181 tctgcccagtttcttagtgaccccttgtagggttgggtccccaagctgtggtctctatta 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttcccagtttcttagtgaccccttgtagggttgggtccccaagctgtggtctctatta 440
Query: 241 agcccttagcttgtattgggtctcacctattcgattctcacgtgcgccttttcagctcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccttagcttgtattgggtctcacctattcgattctcacgtgcgccttttcagctcac 500
Query: 301 gctgcctttattccttcttcacagaggaggtgag--aggtgacccacgcagaaagtaatg 358
||||||||||| |||||||||||||||||||||| |||| |||||||||||
Sbjct: 501 gctgcctttatcccttcttcacagaggaggtgagtgaggt---------agaaagtaatg 551
Query: 359 agtgatttccttgggtgtggtgtgcatccagaaggtaaggggctgggcctcctggagcag 418
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 552 agtgatttacttgggtgtggtgtgcattcagaaggtaaggggctgggcctcctggagcag 611
Query: 419 gggttgggtgtgctggggcttgttgggggcccctggcctaataaggctctggactctgtc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggttgggtgtgctggggcttgttgggggcccctggcctaataaggctctggactctgtc 671
Query: 479 tatcctctagctcatttccgggcaggtctctagcaccaagttccagctgtgtactttcac 538
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tatcctctagctcattcccgagcaggtctctagcaccaagttccagctgtgtactttcac 731
Query: 539 atctggaactgaggacctagggctca 564
||||||||||||||||||||||||||
Sbjct: 732 atctggaactgaggacctagggctca 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
