NNNNNNNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATTCAGTAGGGGTGAAATAGCTACTTCAGCACCGTTT
TGATTTCTCCATGTTTAACGAGATATGTAAGTGCTTTCTGCAGTAATAGG
GCATTTTGTTCAGTTTGTGCAGAGCAGCCCATACCTTTGACAATATCCTG
AGCTAAAGGGCGCTTATAGGGGTCCCTTTTGACTAATGACTCAAATAGAT
AAAACTCATTTCTAGCCTTAGAGGTTTCATTTTATGGCATAAGATGTCTA
GACCCTATAGGAGGATCAACAATATGAACTAATCAGTACCCACCTCCAGA
ACTGTGTCTCTAGTTGCATATGTAGCAGAGGATGACCTAGTTGGCCATCA
ATGGGAGGAGAGGCCTTTGGTCTTGTAAAGATCATACGGCCTAGTACAGG
GGAATACCAGGGCCAGGATGCAGGAGAGGGTAGGTTAGGGATCAGGCAGG
GGGGAGGTTATAGGGCACTTTTGGGATAGCATTTGAAATGTAAATGAAGA
AAATACCTAATAAAAAAGATTTTAAAAAGTAACCAAATAAAAACCAACAA
AGGTTTAAAAAAAAAAAAGGATGTCTAGTTGGGGTATTTTTCTCCACCTA
ATATTTTGTGACTTCATATACATTTCTAATATATGTCTATATTTTCTAAA
TTTTGAAAAATAAAAGTAAGAAACTTTCTTCTGTATTAGGT

NNNNNCCGCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGACACAATATTTTT
GTGAGCACACAAAGAATGAGTAATAGAAAAAGGAAGGATTTACAGAAAGG
ATCAAACTGAGTGAGTAGGAAGAATCTCAATCCCTCAAAAAGCTAGCATT
TCACTTAATATGAAGGTGAACTGCACATGAATGAGCTTAAAATTTCATAA
AGTAAAGAAAGAAATTATAGGAAAAATAAGAAGAAAATATCCACAGACTG
AGATTTCACAAGTGTTCTTGCATTGAAACAAAAATTAAACTGAACGTGAA
CAAGTTAAAGTATAAAATGTGTTATATATATTGTATAAAATGTGTTAAGA
ATATTGTGTAAATAGGACTAAGCTCATTTATTAAGTGAGCCCTTAATAAA
GCATTGTAAAAGAAAACAAATGAGCACATTCATACCTAATAAAAAACCTG
TCATAACTCCTAGTAGGGTAAACAGTTCCAGTGCCAGGAGGACTGGGAGG
CGTGGGCAATGTGGTAAGTTTCCCAACTTCTGTGACAAGGCAGCTCATTG
CTGTTCCCTTATAGATAATGTATAGGCAGAGGGAAAATACATAATGCTTC
TTGGACCCTTCAATGCAATGGGCAAACCATCAACCTCAGCTCTGGGAGGT
GCCCTCATAACAATGCCCGGAGAGAGACGTAAAATAGATA

Query= MSMg01no520_i21.g1 MSMg01no520_i21.g1 CHROMAT_FILE:
MSMg01no520_i21.g1 PHD_FILE: MSMg01no520_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:38 2005
         (648 letters)



>mm_chr4_27353355_27354400
          Length = 1046

 Score = 1120 bits (579), Expect = 0.0
 Identities = 631/651 (96%), Gaps = 8/651 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagacacaatatttttgtgagcacacaaagaatgagtaatagaaaaaggaaggattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 caaagacacaatatttttgtgagcacacaaagaatgagtaatagaaaaaggaaggattta 787

                                                                       
Query: 61  cagaaaggatcaaactgagtgagtaggaagaatctcaatccctcaaaaagctagcatttc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 786 cagaaaggatcaaactgagtgagtaggaagaatctcaacccctcaaaaagctagcatttc 727

                                                                       
Query: 121 acttaatatgaaggtgaactgcacatgaatgagcttaaaatttcataaagtaaagaaaga 180
           | | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| 
Sbjct: 726 agtcaatatgaaggtgaactgcacatgaatcagcttaaaatttcataaag-aaagaaag- 669

                                                                       
Query: 181 aattatagg-aaaaataagaagaaaatatccacagactgagatttcacaagtgttcttgc 239
              |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 668 ---tataggaaaaaataagaagaaaatatccacaggctgagatttcacaagtgttcttgc 612

                                                                       
Query: 240 attgaaacaaaaattaaactgaacgtgaacaagttaaagtataaaatgtg--ttatatat 297
           ||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||
Sbjct: 611 attgaaacaaaaattaaactgaaagtgaacaagttaaagtataaaatgtgttttatatat 552

                                                                       
Query: 298 attgtataaaatgtgttaagaatattgtgtaaataggactaagctcatttattaagtgag 357
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 551 attgtataaaatgtgttaagaatattgtgtaaataggattaagctcatttattaaatgag 492

                                                                       
Query: 358 cccttaataaagcattgtaaaagaaaacaaatgagcacattcatacctaataaaaaacct 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cccttaataaagcattgtaaaagaaaacaaatgagcacattcatacctaataaaaaacct 432

                                                                       
Query: 418 gtcataactcctagtagggtaaacagttccagtgccaggaggactgggaggcgtgggcaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtcataactcctagtagggtaaacagttccagtgccaggaggactgggaggcgtgggcaa 372

                                                                       
Query: 478 tgtggtaagtttcccaacttctgtgacaaggcagctcattgctgttcccttatagataat 537
           ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 371 tgtagtaagtttcccaacttttgtgacaaggcagctcactgctgttcccttatagataat 312

                                                                       
Query: 538 gtataggcagagggaaaatacataatgcttcttggacccttcaatgcaatgggcaaacca 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtataggcagagggaaaatacataatgcttcttggacccttcaatgcaatgggcaaacca 252

                                                              
Query: 598 tcaacctcagctctgggaggtgccctcataacaatgcccggagagagacgt 648
           ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcaccctcagctctgggaggtgccctcataacaatgcccggagagagacgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1046
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1036
Effective search space:   660968
Effective search space used:   660968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)