Query= MSMg01no520_p05.b1 MSMg01no520_p05.b1 CHROMAT_FILE:
MSMg01no520_p05.b1 PHD_FILE: MSMg01no520_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:08 2005
(710 letters)
>mm_chr4_22089169_22090271
Length = 1103
Score = 1237 bits (640), Expect = 0.0
Identities = 686/704 (97%), Gaps = 7/704 (0%)
Strand = Plus / Minus
Query: 5 gaattctcccaaaatgtatcacagaaaacagattttaaaaaataatagcaggccagctct 64
|||||||| ||||| | |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 901 gaattctcacaaaaggaatcacagaaaacagatttaaaaaaataatagcaggctagctct 842
Query: 65 gccacaagcacagcagacagtggaagccgccaactagctgacattggtgtttgtggtaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gccacaagcacagcagacagtggaagccgccaactagctgacattggtgtttgtggtaaa 782
Query: 125 tgtcctgagtgaactccactgtcacctgaaaagaacctcagagaagaaggccctgaaatg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cgtcctgagtgaactccactgtcacctgaaaagaacctcagagaagaaggccctgaaatg 722
Query: 185 agcgtgggaaacaaggcaagcactctgccttctcagctcctctccctgcagtgttgacca 244
||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct: 721 agcgtggaaaacaaggcaagcactct--c--ctcagctcttctccctgcagtgttgacca 666
Query: 245 ggcgcatggaaacacagcaagtcagctgtaggtcccagcatgaaggggcaaactagcaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ggcgcatggaaacacagcaagtcagctgtaggtcccagcatgaaggggcaaactagcaga 606
Query: 305 gagcatgtttcctttcaaagagggccaaaataataccctaacacctgggacaatgaatta 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 605 gagcatgtttcctttcaaagagggccaaaataatagcctaacacctgggacaatgaatta 546
Query: 365 taatacccgttgtgttttatctttgataaacacaaagcagtattactttttaaatttact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taatacccgttgtgttttatctttgataaacacaaagcagtattactttttaaatttact 486
Query: 425 gtgcttttagtttaagtggtgaaataattgttctaagataacagtagataatgcttcaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtgcttttagtttaagtggtgaaataattgttctaagataacagtagataatgcttcaaa 426
Query: 485 cacttaaacgtaactgcaccccgtataccaatgcgtaacctaagagtaagtgggaaattc 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 425 cacttaaacgtaactgcaccccgtataccaatgtgtaacctaagagtaagtgggaaattc 366
Query: 545 caatgggagtctttatccagggtaagaggtatattccttccttgcccttaaatttaaaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caatgggagtctttatccagggtaagaggtatattccttccttgcccttaaatttaaaga 306
Query: 605 ccaactagaagaacacaaagtagcatttttttttcaaatcctagaagtcatgctttcaac 664
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 305 ccaactagaagaacacaaagtagcattttttt---aaatcctagaagtcatgctttcaac 249
Query: 665 ataatagttatttgtgataacttctctgcctcgactgtacctct 708
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctaatagttatttgtgataacttctctgcctcgactgtacctct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1103
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1093
Effective search space: 765100
Effective search space used: 765100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_p05.g1 MSMg01no520_p05.g1 CHROMAT_FILE:
MSMg01no520_p05.g1 PHD_FILE: MSMg01no520_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:08 2005
(561 letters)
>mm_chr4_21930295_21931255
Length = 961
Score = 1050 bits (543), Expect = 0.0
Identities = 556/561 (99%), Gaps = 4/561 (0%)
Strand = Plus / Plus
Query: 1 agggaagatggcagaacatttgcgcatttactcagagatataaaatagttctcatctgct 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaagatggcagaacatttgtgcatttactcagagatataaaatagttctcatctgct 260
Query: 61 ggtggctcaagcattgatggggtatgtgaggaggtagggccagactctttggaagctaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggctcaagcattgatggggtatgtgaggaggtagggccagactctttggaagctaac 320
Query: 121 atgactacaaggagggatttctgaacagagggctaacatggcactggatttaagagatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgactacaaggagggatttctgaacagagggctaacatggcactggatttaagagatat 380
Query: 181 ttatgtgagggcagtctgcgtgcaggactaatcagagaagaggccactgtgctggagagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgtgagggcagtctgcgtgcaggactaatcagagaagaggccactgtgctggagagt 440
Query: 241 ggtaccccatttccatgacttagtgaggcaagagcagggaatagggcagagtactgggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaccccatttccatgacttagtgaggcaagagcagggaatagggcagagtactgggta 500
Query: 301 tgcaggagggaaaggctgcaatcttggatgtgagggcatagagagagatgaagatgaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcaggagggaaaggctgcaatcttggatgtgagggcatagagagagatgaagatgaggc 560
Query: 361 tgaagtatctgctctgatgttgctaatgttagatggaggagacaagaaggaggggaacgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagtatctgctctgatgttgctaatgttagatggaggagacaagaaggaggggaacgg 620
Query: 421 gctgggtgagggcaagaagtttgatgctagccatactgaacccatccaataggaggttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgggtgagggcaagaagtttgatgctagccatactgaacccatccaataggaggttga 680
Query: 481 gtcctcaaactttccaaagtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgt 540
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 gtcctcaaactttccaaagtgtgtgtgtgtgtgtgtgtgtgtgt--gtgtgtgtgtgtgt 738
Query: 541 -t-tgtgtgtgtgtgtgtttg 559
| ||||||||||||||||||
Sbjct: 739 atgtgtgtgtgtgtgtgtttg 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 120
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
