Query= MSMg01no521_c11.b1 MSMg01no521_c11.b1 CHROMAT_FILE:
MSMg01no521_c11.b1 PHD_FILE: MSMg01no521_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:24 2005
(487 letters)
>mm_chr4_149299051_149299937
Length = 887
Score = 888 bits (459), Expect = 0.0
Identities = 480/487 (98%)
Strand = Plus / Minus
Query: 1 tgctttctctagatcgctgagccatctctccagccctatggtgggatggaccttcaggca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 687 tgctttctctagatcgctgagccatctctccagccccatggtgggatggaccttcaggca 628
Query: 61 gctttgtgctttaaaacaatgtggtgctcacacagcagagtattttgtgttaagatttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gctttgtgctttaaaacaatgtggtgctcacacagcagagtattttgtgttaagatttaa 568
Query: 121 ccacatggacgccaggtaaacatccatcacaagatgcacaaacacacgtcacctattaat 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 567 ccacatggacgccaggtaaacatccatcacccgatgcacaaacacacgtcacctattaat 508
Query: 181 cctccaaactgccacacagagggctcttcttcctgcacattcatggtattctctgattgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cctccaaactgccacacagagggctcttcttcctgcacattcatggtattctctgattgt 448
Query: 241 ctcaggagcctctggggctggggctggtatttaatcttctccattttgcaaaagtgaaaa 300
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 447 ctcaggagcctctggggctggggctggtatttcatcttctccgttttgcaaaagtgaaaa 388
Query: 301 acgagcccaagcatgctgaaggtggtgtcggtcttacactgtttccctaagaggcaccta 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 387 acgagcccaagcatgctgaaggtggtgtcggtcttacgctgtttccctaagaggcaccta 328
Query: 361 cttagatacttcccaactcctctgtcctggttcttacctatgtgtgtgggggccactgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttagatacttcccaactcctctgtcctggttcttacctatgtgtgtgggggccactgga 268
Query: 421 cacacgcagatggttcctcggctgtcagctacggtgtgttgttgtttgtttgttgtattt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 267 cacacgcagatggttcctcggctgtcagctacggtgtgttgttgtttgtttgttgtgttt 208
Query: 481 gtttgtt 487
|||||||
Sbjct: 207 gtttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_c11.g1 MSMg01no521_c11.g1 CHROMAT_FILE:
MSMg01no521_c11.g1 PHD_FILE: MSMg01no521_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:24 2005
(491 letters)
>mm_chr4_149163456_149164346
Length = 891
Score = 880 bits (455), Expect = 0.0
Identities = 479/491 (97%), Gaps = 7/491 (1%)
Strand = Plus / Plus
Query: 1 attagcttgtagaaatgatcggtgtctgtgtccttccaaagagctggctccagtcgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagcttgtagaaatgatcggtgtctgtgtccttccaaagagctggctccagtcgcagc 260
Query: 61 cttggcacggctgcagtgcacgcaggacagagtaaggaggtttccatgtgaaagaagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggcacggctgcagtgcacgcaggacagagtaaggaggtttccatgtgaaagaagccg 320
Query: 121 atactctggatacaagcaagaggaggggacaggcctgtcaggtcagcatctggtcacatg 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactctggatacaagcaaggggaggggacaggcctgtcaggtcagcatctggtcacatg 380
Query: 181 gagagaatatctgtctcatgtggattcactcacaataacaaaagcagaggccacattatc 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gagagaatatctgtctcatgtggattcactcacaataacaaaa-------ccacattatc 433
Query: 241 acagtcccccattcacagaggaaggggttgaggcaccaaggacctgcttcgtgtggtttg 300
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 434 acagtcccccattcacagaggaagggattgaggtaccaaggacctgcttcgtgtggtttg 493
Query: 301 gttcctaagggttagaagtggcctttcctgctcccttgggacgctgccactcctcccttg 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gctcctaagggttagaagtggcctttcctgctcccttgggacgctgccactcctcccttg 553
Query: 361 cagctttcatggctctgccccaaggccctgcccactgacctgtgggttccaccaggacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagctttcatggctctgccccaaggccctgcccactgacctgtgggttccaccaggacag 613
Query: 421 gggcaccttatctccagtgccagcccttaaagacactgggaaaccgtggtttcattttgc 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 614 gggcaccttatctccagtgccagcccttaaagacactgggaaaccatggtttcattttgc 673
Query: 481 tgaataaagta 491
|||||||||||
Sbjct: 674 tgaataaagta 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
