Query= MSMg01no521_j19.b1 MSMg01no521_j19.b1 CHROMAT_FILE:
MSMg01no521_j19.b1 PHD_FILE: MSMg01no521_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:59 2005
(696 letters)
>mm_chr4_116613815_116614909
Length = 1095
Score = 986 bits (510), Expect = 0.0
Identities = 516/518 (99%), Gaps = 1/518 (0%)
Strand = Plus / Minus
Query: 5 gaattccctctatagatcaggctgctaggctggcctagaactcacagagatcctcctgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattccctctatagatcaggctgctaggctggcctagaactcacagagatcctcctgcc 458
Query: 65 tctgtcaagtggcatgtgcctctgtgccaggctaggaatctattttcaataaaagagggg 124
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 457 tctgtcaagtggcatgtgcctctgtgccaggctaggaatctattttcattaaaaga-ggg 399
Query: 125 ggaaaaaccagtgttcacatatacaaagtatacatgttgctaaaacaggtgttatatggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggaaaaaccagtgttcacatatacaaagtatacatgttgctaaaacaggtgttatatggg 339
Query: 185 ttctctctgtgtgtgtgtacatgtatgagatatggacacacatacacatacccctcccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttctctctgtgtgtgtgtacatgtatgagatatggacacacatacacatacccctcccca 279
Query: 245 cacacacaccagcctggcctcaaactccctatgtaactgaggaagatcttgaacttgtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cacacacaccagcctggcctcaaactccctatgtaactgaggaagatcttgaacttgtta 219
Query: 305 atgtatgtaagacatacagacaggcagacagaagcacagacacactcacatgctcatgca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atgtatgtaagacatacagacaggcagacagaagcacagacacactcacatgctcatgca 159
Query: 365 cacacgctccccaggctagcctcaaacttcctaggcagttgaggaaattcttgaatttct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cacacgctccccaggctagcctcaaacttcctaggcagttgaggaaattcttgaatttct 99
Query: 425 gatcttcctacctctatctcccaggtgctgggattacatgtgtgtaccactatatcctgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gatcttcctacctctatctcccaggtgctgggattacatgtgtgtaccactatatcctgt 39
Query: 485 ttattcgttgttggggatagaatccagtggtttgtgta 522
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ttattcgttgttggggatagaatccagtggtttgtgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1095
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1085
Effective search space: 744310
Effective search space used: 744310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_j19.g1 MSMg01no521_j19.g1 CHROMAT_FILE:
MSMg01no521_j19.g1 PHD_FILE: MSMg01no521_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:00 2005
(487 letters)
>mm_chr4_116520508_116521394
Length = 887
Score = 673 bits (348), Expect = 0.0
Identities = 387/414 (93%), Gaps = 22/414 (5%)
Strand = Plus / Plus
Query: 96 ccaagttctgagtgtagagctctaaaatgtccacatcagccttccttgctcctgagcagt 155
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ccaagttctgggtgtagagctctaaaatgtccacatcagccttccttgctcctgagcagt 333
Query: 156 gtgtgctgtcacagggggtgggggtgg----------------------ggagcaccctc 193
||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 gtgtgctgtcacagggggtgggggtggaggtgggggtgggtgggggtggggagcaccctc 393
Query: 194 ctccgggatggagcagggtctcactctgtagcctgggacagctgggtgtttgctatgcag 253
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctccgggacggagcacggtctcactctgtagcctgggacagctgggtgtttgctatgcag 453
Query: 254 actaggctgcaattgaacttgtggcagtcctcctgcctctgcctctcaagtgctgagatt 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 actaggctgcaattgaacttgtggcagtcctcctgcctctgcctctcaagtgctgagatt 513
Query: 314 acaggtgtgaactatcatgcccactgtaaacatttcttcttcgaactgaatgtcttgaaa 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 514 acaggtgtgaactatcatgcccactgtaaacatttcttcttcgaactgaatgtctcgaaa 573
Query: 374 catatgaaaccccatgttacagggataggaaataaagatattaaggttgttgggtgtggt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 catatgaaaccccatgttacagggataggaaataaagatattaaggttgttgggtgtggt 633
Query: 434 ggcacatattggtaatctctatgctcagagggagacagcaggagaactgtggta 487
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 634 ggcacatattggtaatctctatgctcagagtgagacagcaggagaactgtggta 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
