BAC Information

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BAC

Clone NameMSMg01-521L06
Chromosome4 (Build37)
Map Location 89,852,773 - 89,979,050
singlet/doubletdoublet
Overlap geneZfp352
Upstream geneLOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
Downstream geneLOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521L06.T7 (MSMg01no521_l06.b1)MSMg01-521L06.TJ (MSMg01no521_l06.g1)
ACCAG592437AG592438
length745744
length of high quality
(start - end)		586 (51 - 636)567 (82 - 648)
definitionCHROMAT_FILE: MSMg01no521_l06.b1 PHD_FILE: MSMg01no521_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:07 2005CHROMAT_FILE: MSMg01no521_l06.g1 PHD_FILE: MSMg01no521_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,978,699 - 89,979,050)(89,852,773 - 89,853,339)
sequence
CGGTACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTGTTTTAGGTTAATTTGAAGTGGGAAGATCCACTTCT
AATCCAGCACATAGAGGTAGGAAGAAACATATTTAATCTTGATCATAAGC
CAGAAAGACATAACTTTAATCCAGATCTTTTGATCTGGGAAAACCTACCA
CTCATAAGGGCCACACCTTCTGCTGGAACCATATATAAGTACATGGAAAA
AGGAAGCTTTTGCTCTTCATATGTTTGTTCTTTCCTCATTAGCAGGTGTA
TTTCTTCACTAGGATTGAAGCCTCCATCTTAGGGTTCAAGTACATACTGA
AGATTAGCTGAGACATCCAGCTCATGAACTGAGCAGCTAGTAGATACTTG
AACTTTCCATTTATAATCAGCTATTTGAATAGCAAGACCATAGCCTATAT
AAGACATTTTTATAAATCCCTTTATATATAGAGAGACACCACTGAACTGT
CTAGACATGTCAGCCACCCAAGTAAAGACATGGAGACATTTTATTAATTA
TGAAAACTTGGACTTAGCTTTCTTGTTCCTAACTAGCTCATGTAAATTAA
ATTAATCACATCTACATCTAATCTAATCTACATCTGCCAAGTGGTCCTAA
CCTCTCCTCAGTCCCAGCACGTGCTTCACTCTCCACATCAAGCTGGCCAA
TTCCCCTCAGCTGATTCTTTCTCAGAGTTCCTATCTCAGCCTGAA

TTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCTTTTGTCATTCTG
CTTTCTGTCACAATAATAAAATAATCACACCCTCTGCCATGTGATAGGCA
GTGAGAGGCACTGTATTGGAAATACAGTGAGTCTTCACCAGAAACTGAAC
CTGGCAGTTCTTTGATCTTGGACTTTCCAGCCTACAGGATTATGAAATAA
TGAATTTATGCTCTCGTAAATAACCCAATTTCTGGCATTTTGTTATAGTA
GTACTAAAAGATAAAGTTAATTGAACAGAAAACTACATAATAATTTGCTG
AAGAAAGTGTCTTTATCTCTTAAATATAACAGGTTAGGTAACATAGTACC
CCATTTACTTTTTATATGGAAACTCTTTTGTGTTCTGAGATTCATATTTA
TTTTGTCTTACATATTGTCAGGGTTTAGATGTACAGGACATAGAGCACTG
TTTTATTAAGCTAGAAAAGGAATGATACAAACAAATCCTGTTGGACTCTG
GGCAATGGGGAAAAGGTGTAACAGCAGTCCTTCTTTCTCTCTAAAAAATA
AAATAAAATAAATGATAATAATGATAATAATAATAATAAACTACATCAGA
GTCTTAGTTCCACAAAATTTTTAGGACAGTAACATTGCTGTTTCCAGGGA
GCATACTTGATTAGGGGAAGAAGCAAACTGAGAACTTCAGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_l06.b1 MSMg01no521_l06.b1 CHROMAT_FILE:
MSMg01no521_l06.b1 PHD_FILE: MSMg01no521_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:07 2005
         (586 letters)



>mm_chr4_89978065_89979050
          Length = 986

 Score =  665 bits (344), Expect = 0.0
 Identities = 350/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 235 ctcattagcaggtgtatttcttcactaggattgaagcctccatcttagggttcaagtaca 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ctcattagcaggtgtatttcttcactaggattgaagcctccatcttagggttcaagtaca 927

                                                                       
Query: 295 tactgaagattagctgagacatccagctcatgaactgagcagctagtagatacttgaact 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 tactgaagattagctgagacatccagctcatgaactgagcagctagtagatacttgaact 867

                                                                       
Query: 355 ttccatttataatcagctatttgaatagcaagaccatagcctatataagacatttttata 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ttccatttataatcagctatttgaatagcaagaccatagcctatataagacatttttata 807

                                                                       
Query: 415 aatccctttatatatagagagacaccactgaactgtctagacatgtcagccacccaagta 474
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 806 aatccctttatatagagagagacaccactgaactgtctcgacatgtcagccacccaagta 747

                                                                       
Query: 475 aagacatggagacattttattaattatgaaaacttggacttagctttcttgttcctaact 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aagacatggagacattttattaattatgaaaacttggacttagctttcttgttcctaact 687

                                                               
Query: 535 agctcatgtaaattaaattaatcacatctacatctaatctaatctacatctg 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agctcatgtaaattaaattaatcacatctacatctaatctaatctacatctg 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_l06.g1 MSMg01no521_l06.g1 CHROMAT_FILE:
MSMg01no521_l06.g1 PHD_FILE: MSMg01no521_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:07 2005
         (567 letters)



>mm_chr4_89852573_89853539
          Length = 967

 Score = 1081 bits (559), Expect = 0.0
 Identities = 565/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccttttgtcattctgctttctgtcacaataataaaataatcacaccctctgccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccttttgtcattctgctttctgtcacaataataaaataatcacaccctctgccatg 260

                                                                       
Query: 61  tgataggcagtgagaggcactgtattggaaatacagtgagtcttcaccagaaactgaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataggcagtgagaggcactgtattggaaatacagtgagtcttcaccagaaactgaacc 320

                                                                       
Query: 121 tggcagttctttgatcttggactttccagcctacaggattatgaaataatgaatttatgc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tggcagttctttgatcttggactttccagcctacaggattgtgaaataatgaatttatgc 380

                                                                       
Query: 181 tctcgtaaataacccaatttctggcattttgttatagtagtactaaaagataaagttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcgtaaataacccaatttctggcattttgttatagtagtactaaaagataaagttaat 440

                                                                       
Query: 241 tgaacagaaaactacataataatttgctgaagaaagtgtctttatctcttaaatataaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaacagaaaactacataataatttgctgaagaaagtgtctttatctcttaaatataaca 500

                                                                       
Query: 301 ggttaggtaacatagtaccccatttactttttatatggaaactcttttgtgttctgagat 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttaggttacatagtaccccatttactttttatatggaaactcttttgtgttctgagat 560

                                                                       
Query: 361 tcatatttattttgtcttacatattgtcagggtttagatgtacaggacatagagcactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatatttattttgtcttacatattgtcagggtttagatgtacaggacatagagcactgt 620

                                                                       
Query: 421 tttattaagctagaaaaggaatgatacaaacaaatcctgttggactctgggcaatgggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttattaagctagaaaaggaatgatacaaacaaatcctgttggactctgggcaatgggga 680

                                                                       
Query: 481 aaaggtgtaacagcagtccttctttctctctaaaaaataaaataaaataaatgataataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggtgtaacagcagtccttctttctctctaaaaaataaaataaaataaatgataataa 740

                                      
Query: 541 tgataataataataataaactacatca 567
           |||||||||||||||||||||||||||
Sbjct: 741 tgataataataataataaactacatca 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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