Query= MSMg01no521_o02.b1 MSMg01no521_o02.b1 CHROMAT_FILE:
MSMg01no521_o02.b1 PHD_FILE: MSMg01no521_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:20 2005
(693 letters)
>mm_chr4_109334307_109335399
Length = 1093
Score = 1255 bits (649), Expect = 0.0
Identities = 687/713 (96%), Gaps = 25/713 (3%)
Strand = Plus / Plus
Query: 5 gaattcctgcaacatgaataaatttgatggctaatttggtttttttatctttcacaaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaattcctgcaacatgaataaatttgatggctaatttggtttttttatctttcacaaaga 241
Query: 65 cctgtgtagtttttttttcataaatttctttaaaaaaagaaagaa----agaaagaaaga 120
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 242 cctgtgtagtttttttt-cataaatttctttaaaaaaagaaagaagggaagaaagaaaga 300
Query: 121 aagaaagagaga--ga--------------gaaagaaaggaag----aaaggaagaaaga 160
|||||||| ||| || ||||||||||||| |||||||||||||
Sbjct: 301 aagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagaaaggaagaaaga 360
Query: 161 aagaaatgtaacttggtatttaagtaaagagactcctgtttgtttactcatgcttataaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagaaatgtaacttggtatttaagtaaagagactcctgtttgtttactcatgcttataaa 420
Query: 221 atatacctggggtattaatcctggaagattggatgaggatagaatttattttctaatagc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atatacctggggtattaatcctggaagattggatgaggatagaatttattttctaatagc 480
Query: 281 tactgaaaatcaatgatgagattctttaagcctcctacataagtgtcacttcctgtggga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tactgaaaatcaatgatgagattctttaagcctcctacataagtgtcacttcctgtggga 540
Query: 341 cagaccctttaaagtcccagagttggcattttcttaggtgattcttaacaaagcctctcc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cagaccctttaaagtcccagagttggcattttcttaggtgattcttaacaaagcctctcc 600
Query: 401 acacacatgcttgaaatttccaagcatttgtagttttctttataggctaaaatattggct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acacacatgcttgaaatttccaagcatttgtagttttctttataggctaaaatattggct 660
Query: 461 actgggagtattccatgcctagacttcatttcaaattacagactattactgggttattga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actgggagtattccatgcctagacttcatttcaaattacagactattactgggttattga 720
Query: 521 ggtattaaattaaggcactgtgttctacattacttattatatcaatttactttgaactac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggtattaaattaaggcactgtgttctacattacttattatatcaatttactttgaactac 780
Query: 581 gttgatgatatgcctcggatcagaaaagaggtgattgcatggctgccgttcctgaaagga 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gttgatgatatgcctcggatcagaaaagaggtgattgcatggctgccgttcctgaaagga 840
Query: 641 atcaaacagccatcctactacagtagttggcatttctcaaagttccaactagc 693
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 atcaaacagccatcctactacagtagttggcatttctcaaagttccaactagc 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_o02.g1 MSMg01no521_o02.g1 CHROMAT_FILE:
MSMg01no521_o02.g1 PHD_FILE: MSMg01no521_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:20 2005
(661 letters)
>mm_chr4_109496645_109497705
Length = 1061
Score = 847 bits (438), Expect = 0.0
Identities = 450/454 (99%)
Strand = Plus / Minus
Query: 208 cttgaagagcacataggaaggctggataataaataaagatgttacagccaagtgtgtgct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 cttgaagagcacataggaaggctggataataaataaagatgttacagccaagtgtgtgct 1002
Query: 268 tgttcatagatacctattctcacaatccctagagctgaaaacattttgtaaaacaagctt 327
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1001 tgttcatagatacctattctcacaatctctagagctgaaaacattttgtaaaacaagctt 942
Query: 328 ttaaagatacctttaaaatgtttgaaaagacagttatattataggactatatattatagg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ttaaagatacctttaaaatgtttgaaaagacagttatattataggactatatattatagg 882
Query: 388 acaattgaaaataataaatggaggaatcacagttgtcctaataatgtatagacatagtat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 acaattgaaaataataaatggaggaatcacagttgtcctaataatgtatagacatagtat 822
Query: 448 taaataatattttctccctaagagagaaggtttagctaacatgcctaatacaaatttcta 507
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 821 taaataatattttctccctaagagagaaggtttaactaacatgcctaatacaaatttcta 762
Query: 508 ttacatagtagatagatattcaacaagtaggatattattttgaaaatgagtacttgtggc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttacatagtagatagatattcaacaagtaggatattattttgaaaatgagtacttgtggc 702
Query: 568 ttgagataagatatataattagagtattgtgactcatatactgagtatatatggactcaa 627
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 701 ttgagataagatatataattagagtgttgtgactcatatactgagtatatatggactcaa 642
Query: 628 agtgtgctaaatctcaactactgtacaaacagga 661
|||||||||||||||||||||||||||||||||
Sbjct: 641 cgtgtgctaaatctcaactactgtacaaacagga 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
