Query= MSMg01no522_d14.b1 MSMg01no522_d14.b1 CHROMAT_FILE:
MSMg01no522_d14.b1 PHD_FILE: MSMg01no522_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:46 2005
(676 letters)
>mm_chr4_90952505_90953587
Length = 1083
Score = 1118 bits (578), Expect = 0.0
Identities = 631/652 (96%), Gaps = 9/652 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttgccataatgttggagccaaggcttggattagtggttcttaaacctttgaat 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ggaattcttgccataatgttggagccaaggcttggattagtggttcttaaacctttgaaa 592
Query: 64 gcctatgggcacaggtagcttgggaagggagctgggaagcatgggatgctagttctgctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gcctatgggcacaggtagcttgggaagggagctgggaagcatgggatgctagttctgctt 532
Query: 124 ttaagaaatg----ggtt---ttttttttcataatgaactataattggactttaaatgtg 176
|||||||||| | || |||||||||||||||||||||||||||| ||||||||||
Sbjct: 531 ttaagaaatgttttgtttttgttttttttcataatgaactataattggaatttaaatgtg 472
Query: 177 gagttttgtaagagtgtttccaaaggtgaactttagtttgggggtaattaatgcatgcgt 236
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 471 gagttttgtaagagtgtttccaaaagtgaactttagtttgggggtaattaatgcatgtgt 412
Query: 237 tctaaactcagagtaacttggaatattttgaacgatatgggaaaggtgtttggttcctaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tctaaactcagagtaacttggaatattttgaacgatatgggaaaggtgtttggttcctaa 352
Query: 297 gccttccctggtgtaggtcctgctggtaagtaactatggaacacaggaatagaaagacta 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 351 gccttccctggtgtaggtcctgctggtaagtaactatggaacacaggaatagaaagacga 292
Query: 357 gctaggtcttggctcagtagttttctcagtaggttttccttccttc-aggtttggttaac 415
||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct: 291 gctaggtcttggctcagtagttttcacagtaggttttccttccttcga-gtttggttaac 233
Query: 416 tattacttttttaaaaatgaaaacttctgggggctggtgagatggctcagcaggtaagag 475
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tattgcttttttaaaaatgaaaacttctgggggctggtgagatggctcagcaggtaagag 173
Query: 476 cactgactgctcttccgaaggtcctgagttcaaatcccagcaaccacacgctggctcaca 535
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 172 cactgactgctcttctgaaggtcctgagttcaaattccagcaaccacacgctggctcaca 113
Query: 536 accatccgtagtgagatgtgacaccctcttctggtgtgtcttaagacagctacagtgtac 595
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 112 accatcagtagtgagatgtgacaccttcttctggtgtgtcttaagacagctacagtgtac 53
Query: 596 ttacatataataataaagaaaatcttttttaaaagagcaaacttctaaccag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ttacatataataataaagaaaatcttttttaaaagagcaaacttctaaccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1083
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1073
Effective search space: 714618
Effective search space used: 714618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_d14.g1 MSMg01no522_d14.g1 CHROMAT_FILE:
MSMg01no522_d14.g1 PHD_FILE: MSMg01no522_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:47 2005
(660 letters)
>mm_chr4_90758663_90759721
Length = 1059
Score = 1239 bits (641), Expect = 0.0
Identities = 655/660 (99%), Gaps = 1/660 (0%)
Strand = Plus / Plus
Query: 1 cacttttccttggggcacctccttctccaggctcaggctcctcttcagaagttcctgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttttccttggggcacctccttctccaggctcaggctcctcttcagaagttcctgtcc 260
Query: 61 caagtacaagactctgaacacccctctcaaacctgctgatttttgaaggaccttaaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtacaagactctgaacacccctctcaaacctgctgatttttgaaggaccttaaggtg 320
Query: 121 agcaacctttccttcagagtccctagcccgggtatcaggcaaatgcttgcaccggctggc 180
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 agcagcctttccttcagagtccctagcccgggtgtcaggcaaatgcttgcaccggctggc 380
Query: 181 tggcatatgtggcctgctgcagactaatttcttctgacatgttgccttgaatgcacagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcatatgtggcctgctgcagactaatttcttctgacatgttgccttgaatgcacagtc 440
Query: 241 acagagcatgtgctgaagtgctaaacacccccaaactgtgtgctttccaatctgggaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagagcatgtgctgaagtgctaaacacccccaaactgtgtgctttccaatctgggaaag 500
Query: 301 cttttcggtgggtccaggcttttctctcgacctgaggcatcataatggggcagcacatgg 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 cttttcggtgggtccaggcttttctctcgacctgaggcgtcataatggggcagcacatgg 560
Query: 361 acacttcattgaggcaatctgtcatcctacaaacgtttaatagcggcagcggtacctgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacttcattgaggcaatctgtcatcctacaaacgtttaatagcggcagcggtacctgtg 620
Query: 421 tgccactctcagtgagccagacaccgccaaacagctgctcttctgttgaagttggtgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccactctcagtgagccagacaccgccaaacagctgctcttctgttgaagttggtgctg 680
Query: 481 cattaataagcttgcagacaaagaagtgtctgtgtggtatgtggctctgcacacagactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattaataagcttgcagacaaagaagtgtctgtgtggtatgtggctctgcacacagactg 740
Query: 541 aatgtagagtccagaaggagaccggcactcaaaaaccatacaactcccattacagaaaat 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgtagag-ccagaaggagaccggcactcaaaaaccatacaactcccattacagaaaat 799
Query: 601 tggtttggggctcanagaaattaatatgtgtgctaatattcctgaattagacatgctagg 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tggtttggggctcaaagaaattaatatgtgtgctaatattcctgaattagacatgctagg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1059
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1049
Effective search space: 681850
Effective search space used: 681850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
