BAC Information

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BAC

Clone NameMSMg01-522K10
Chromosome4 (Build37)
Map Location 18,525,073 - 18,525,388
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522K10.T7 (MSMg01no522_k10.b1)MSMg01-522K10.TJ (MSMg01no522_k10.g1)
ACCAG593158AG593159
length747744
length of high quality
(start - end)		573 (51 - 623)562 (82 - 643)
definitionCHROMAT_FILE: MSMg01no522_k10.b1 PHD_FILE: MSMg01no522_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:18 2005CHROMAT_FILE: MSMg01no522_k10.g1 PHD_FILE: MSMg01no522_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTGA
TATAGCTGTCTCCTGTGAGGCTATGCCAGTGCCTGGCAAATGCAGAAGTG
GATGCTCACAGTCATCTATTGGATAGAACACAGGGCTCCAAATGGAGGAG
CTAGAGAAAGTACCCAAGGAGCCGAAGGGGTCTGCAACCCTATAGGTGGA
ACAACAAAATGAACTAACCAGTATCCACAGAGCTTGTGCCTCTAGCTGCA
TATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCTCCT
TGGTCTTGCAAACTTTATATGCCCCAGTACAGGGAATGCCAAGGCCAAGA
AATGGGTGTGGGTGGGTAGGAAAGCAGGGCAGGGGGAGGGTATCGGGGAC
TTCCAGGATAGCATTTGAAATTTAAATAAAGAAAATATCTAATAAAAATT
GAAAAATTAAAAAGCAAATAATAAAAATAAAAGGAAAGAAGACAATACCT
AGGTAAATTTAAGGGTTTTTTTGGGGAGCGGGTTGTAGGGGTGGTGGTCA
GTAGCTCTTGACAATGATATCATAAATTAAAAATGTAATTTTAAAACCTC
ATTTAACTTGCACCTTTTCCCTTGTAGCATGTGAGGAAATGATGGAAAAT
AACATGATATTTTAAAACATATAAGTTAGATTTTATTAAATGAAACC

NNNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATACAATCCAGAATTGA
AGGGTACACCTGTGATCCAGATCTTGAGGCTGCATGACACAAATTTCTGA
CCTGGATCTTGGAATGAAGATCTTGAGGCATAGTGACAATGAAAAGGTTA
GGCCCAGGCAAGGTAGCAGTTAGCTTTAATACCAGGTGACTGACGCAAGG
AGATCTCTGAGTTCAAGGTCAGCCTGGGGCAAAGCAAGTCCCAAATCCAG
GGATGGTGGTACACAGCTTCAATCTGGGCCACATCATCTGCTGGAGGCAT
ACATTGGAAGATGGAAGATTCACTCTTCTTCACTTACTTGTCAGCACATG
TGTTAGAACCTACTGCTATAGAAGACCAGCTTAAACAACTAGCCTCATGG
GACTGAGCAACTACTAGATTATTGAATTTTCCATTCACAGCTGCCTATTG
TTGAGTTAGGTAGACTACAGACTATAAGCCATCACATTCCCTTCAATATA
GAGAGACATTCCATTTGTTCTGTGACTCTAGGGAACCCTGACTAATACAA
GCTTCTTGGACTTTTCCTTTCTAAAGACTGCTGTGCAAAGTAGAAAATAT
TCTCTGATCAACCTCTGTTTATATTTCCTCCTAAAGATGCATTTGCAAGC
AAACAAACAAAAAAAACACAAAAAACTAAACAAACAAACTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_k10.b1 MSMg01no522_k10.b1 CHROMAT_FILE:
MSMg01no522_k10.b1 PHD_FILE: MSMg01no522_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:18 2005
         (573 letters)



>mm_chr4_18524416_18525388
          Length = 973

 Score =  526 bits (272), Expect = e-153
 Identities = 305/316 (96%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 259 agaagatggcctagtcagccatcattgggaagagaggctccttggtcttgcaaactttat 318
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 973 agaagatggcctagtcagccatcattgggaagagaggctccttggtcttgcaaaatttat 914

                                                                       
Query: 319 atgccccagtacagggaatgccaaggccaagaaatgggtgtgggtgggtaggaaagcagg 378
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 913 atgccccagtacagggaatgccaaggccaagaaatgggtgtaggtgggtagggaagcagg 854

                                                                       
Query: 379 gcagggggagggtatcggggacttccaggatagcatttgaaatttaaataaagaaaatat 438
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 853 gcagggggagggtattggggacttccgggatagcatttgaaatttaaataaagaaaatat 794

                                                                       
Query: 439 ctaataaaaattgaaaaat-taaaaagcaaataataaaaataaaaggaaagaagacaata 497
           ||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||| |||
Sbjct: 793 ctaataaaacttgaaaaaaataaaaaacaaataataaaaataaaaggaaagaagacgata 734

                                                                       
Query: 498 cctaggtaaatttaagggtttttttggggagcgggttgtaggggtggtggtcagtagctc 557
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cctaggtaaatttaagggtgtttttggggagcgggttgtaggggtggtggtcagtagctc 674

                           
Query: 558 ttgacaatgatatcat 573
           ||||||||||||||||
Sbjct: 673 ttgacaatgatatcat 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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