Query= MSMg01no522_m01.b1 MSMg01no522_m01.b1 CHROMAT_FILE:
MSMg01no522_m01.b1 PHD_FILE: MSMg01no522_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:26 2005
(534 letters)
>mm_chr4_44350080_44351013
Length = 934
Score = 698 bits (361), Expect = 0.0
Identities = 364/365 (99%)
Strand = Plus / Minus
Query: 4 ggaattctgactattgtccacatcatagcagggggcagaaaagacttcagagaaagaact 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggaattctgactattgtacacatcatagcagggggcagaaaagacttcagagaaagaact 332
Query: 64 gcagaactaaatccttccttttccccaattatactaaagatcctccacatccatcgtgtc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcagaactaaatccttccttttccccaattatactaaagatcctccacatccatcgtgtc 272
Query: 124 acgtgtgctgccaccttttgaaaacaaatttataaaaacaaacaaaccctgtttgaaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acgtgtgctgccaccttttgaaaacaaatttataaaaacaaacaaaccctgtttgaaaga 212
Query: 184 cacagaatgggctggagacatagctcagtggttaagagcaccgactgctcttccaaaggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cacagaatgggctggagacatagctcagtggttaagagcaccgactgctcttccaaaggt 152
Query: 244 cctgagttcaaatcccagcaaccacatgatggctcacgaccatccgtaatgagatctggt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cctgagttcaaatcccagcaaccacatgatggctcacgaccatccgtaatgagatctggt 92
Query: 304 gcatctgaagacagctacagtgtacttaaatataataataaataaatcttttaaagaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gcatctgaagacagctacagtgtacttaaatataataataaataaatcttttaaagaaag 32
Query: 364 aaaga 368
|||||
Sbjct: 31 aaaga 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_m01.g1 MSMg01no522_m01.g1 CHROMAT_FILE:
MSMg01no522_m01.g1 PHD_FILE: MSMg01no522_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:26 2005
(597 letters)
>mm_chr4_44204551_44205547
Length = 997
Score = 1102 bits (570), Expect = 0.0
Identities = 591/598 (98%), Gaps = 1/598 (0%)
Strand = Plus / Plus
Query: 1 tattccttcttatggactatttgagctctcctgaaaactactgatgtagaaaaaccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tattccttcttatggactatttgagctctcctgaaaactactgatgtagaaaaaccacca 259
Query: 61 aaattttaaagaaacaaaaatgcaaacttcaaaacaataaatatactaagttcttatcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaattttaaagaaacaaaaatgcaaacttcaaaacaataaatatactaagttcttatcta 319
Query: 121 taaaaacaatcaaactgggtatgcttttaatcttagtactgggaggcagaggcagagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taaaaacaatcaaactgggtatgcttttaatcttagtactgggaggcagaggcagagggg 379
Query: 181 cagaggagcagaggggcagaggcagaggcaaaaggatctctatgagtttgaaaccaccct 240
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 cagaggagcagagggacagaggcagaggcaaaaggatctctatgagtttgaaaccatcct 439
Query: 241 agtttaaacagtaaggtccaagacagccaagactacacagagagaccccatcttggggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtttaaacagtaaggtccaagacagccaagactacacagagagaccccatcttggggga 499
Query: 301 aaaaa-taataaaaattaaaaatagacacaaactattcagagactctcgaaaaagataat 359
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 aaaaaataataaaaattaaaaatagacacaaactattcagagactcttgaaaaagataat 559
Query: 360 gggacagcgacatgtctttgtattattttccttttctgtaaggataagcttgacccctgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggacagcgacatgtctttgtattattttccttttctgtaaggataagcttgacccctgt 619
Query: 420 aattatcaaagaaggatggaggagatctctcggtgggtaaaagcacttaagggcacgtct 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 aattatcaaagaaggatggaggagatctctcggtgggtaaaagcacttaagggcacatct 679
Query: 480 gacgacgggaactgacctggaagcttaggccaaccagcctagtgtaggcagcagggcagt 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gatgacgggaactgacctggaagcttaggccaaccagcctagtgtaggcagcagggcagt 739
Query: 540 aacacaacggaaaaatgctgcctcaaacaaggtggaaggtgagggcaagtgcttaagg 597
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacacaacggaaagatgctgcctcaaacaaggtggaaggtgagggcaagtgcttaagg 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
