BAC Information

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BAC

Clone NameMSMg01-522P08
Chromosome4 (Build37)
Map Location 77,708,705 - 77,851,331
singlet/doubletdoublet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996, LOC100040026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522P08.T7 (MSMg01no522_p08.b1)MSMg01-522P08.TJ (MSMg01no522_p08.g1)
ACCAG593393AG593394
length753772
length of high quality
(start - end)
458 (88 - 545)143 (523 - 665)
definitionCHROMAT_FILE: MSMg01no522_p08.b1 PHD_FILE: MSMg01no522_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:42 2005CHROMAT_FILE: MSMg01no522_p08.g1 PHD_FILE: MSMg01no522_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,850,874 - 77,851,331)(77,708,705 - 77,708,847)
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATAGTTAGACAAAATAGAACAACAACAACAACAACAACAA
TAAAACCTGACAGTGTACCACCTATTTTAGGATTGTGCATTTCCTGGCTG
TGCCACAGCACCCTTTTCTCTATCATTCTGTGCCACAGACATCTCTTCTA
GAAGCAGGATGGAATCTGTTGCATATTTAGCAGCAGTGACAGCCTTTCTG
TCTCCCACTGTCATTTGTTGGCAACCTTCTTTATCTTCTAAGCTGCATTG
CCTCATGGCCATTTCCTCGTGTGTCACACTCTCCAACATCACAAGAAGCA
ATAGAGCACAGTGGGCACACGCTGTACTACTGTCATGTTGACATGGTACA
GGAAACACTAATGAGTCTCCAGGCCAGTGTTGGCACTTTAAGCACCCATC
AAACCCCGTGTTTTCAAATCACAGTGGAAGTTACAGTCAGGATTTCTATC
ATTGCTGCTGTTATAACCATGCCAGATATGTCGTGGCTTCCTCAGCGAAG
AACAGAGACACTGAAGAAATTCTGATCACATTGAAGGAAGTGCAAGATAG
CTTTATAGGAGGCCTTATATTATGGACTTTGTTAAAAATCTCTGAGGAAG
GAAAAATTAAGATAAAATATATTTTACAAATGAACTGCGACTGTTATGTA
TCCTTAAATTTGATAAAGAATTCTGCTAAATTCTTGAAGAACTCATGAGG
ACN
NAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTCAAAAATCATGTTTAAA
TGTATATACATTACACACACACACACACACACACACACATATACATATAT
ATGTATGTGTATATATATGTAATAAGTTAGATGATTTAGGATACCAGGAA
TTGATACATAATATTCTAATAAAATTTGAGAATATGTTATCACTCTTTAA
ATAATACTGAAAAAGAGTTTTGACTAAGTAAAATAAATAAATAAGCGTCT
GACTTGAAAGTCTGTGTCCTTTACAGCGTCCTGCATTTGGTGCACATAAA
ATAATATATAACCAGGACATGTGGCAAACTGCCTGAGAGATGTGATGAAT
CAAAACCCTTTCTTATGGACCCCACNATGAGATGACATTAGTTTTATCAG
CCCTTCTCATAATGCTTAAAGAAAAATTAACAATACTAGTGTACTGTGTA
TACTGGAGGAGTAATGCAACTGGTCACTAAAGTTAACGAAGGACACAATC
ATGAAAAATATGCACAATAGCCAAAAATATTTATGAAATTAAACAAAGCT
CACACTGAAAAGCAGGAATGATAACACAAAAATGTGTCTTAAGGAATGTG
GGATACAGAGAGCTTGAGATTTACTTTTGGTTTTATGATAAACATGAATG
AATTTTACCGTTAAAATGGTAAGTTACTTCCGTATATTTTAACTTTTTAA
AGATTTTAACTTTGGGGTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_p08.b1 MSMg01no522_p08.b1 CHROMAT_FILE:
MSMg01no522_p08.b1 PHD_FILE: MSMg01no522_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:42 2005
         (458 letters)



>mm_chr4_77850674_77851531
          Length = 858

 Score =  886 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaacaacaacaataaaacctgacagtgtaccacctattttaggattgtgcatttcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 acaacaacaacaataaaacctgacagtgtaccacctattttaggattgtgcatttcctgg 599

                                                                       
Query: 61  ctgtgccacagcacccttttctctatcattctgtgccacagacatctcttctagaagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ctgtgccacagcacccttttctctatcattctgtgccacagacatctcttctagaagcag 539

                                                                       
Query: 121 gatggaatctgttgcatatttagcagcagtgacagcctttctgtctcccactgtcatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gatggaatctgttgcatatttagcagcagtgacagcctttctgtctcccactgtcatttg 479

                                                                       
Query: 181 ttggcaaccttctttatcttctaagctgcattgcctcatggccatttcctcgtgtgtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttggcaaccttctttatcttctaagctgcattgcctcatggccatttcctcgtgtgtcac 419

                                                                       
Query: 241 actctccaacatcacaagaagcaatagagcacagtgggcacacgctgtactactgtcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 actctccaacatcacaagaagcaatagagcacagtgggcacacgctgtactactgtcatg 359

                                                                       
Query: 301 ttgacatggtacaggaaacactaatgagtctccaggccagtgttggcactttaagcaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgacatggtacaggaaacactaatgagtctccaggccagtgttggcactttaagcaccc 299

                                                                       
Query: 361 atcaaaccccgtgttttcaaatcacagtggaagttacagtcaggatttctatcattgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atcaaaccccgtgttttcaaatcacagtggaagttacagtcaggatttctatcattgctg 239

                                                 
Query: 421 ctgttataaccatgccagatatgtcgtggcttcctcag 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctgttataaccatgccagatatgtcgtggcttcctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no522_p08.g1 MSMg01no522_p08.g1 CHROMAT_FILE:
MSMg01no522_p08.g1 PHD_FILE: MSMg01no522_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:42 2005
         (143 letters)



>mm_chr4_77708505_77709047
          Length = 543

 Score =  253 bits (131), Expect = 3e-72
 Identities = 140/143 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcactaaagttaacgaaggacacaatcatgaaaaatatgcacaatagccaaaaatattt 60
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gtcactaaagttaacgaaggaaacaatcatgaaaaaaatgcacaatagccaaaaatattt 260

                                                                       
Query: 61  atgaaattaaacaaagctcacactgaaaagcaggaatgataacacaaaaatgtgtcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaaattaaacaaagctcacactgaaaagcaggaatgataacacaaaaatgtgtcttaa 320

                                  
Query: 121 ggaatgtgggatacagagagctt 143
           |||| ||||||||||||||||||
Sbjct: 321 ggaacgtgggatacagagagctt 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)