CTAAATCTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTAATGGCCCACCTTCATAATTTAAGTTAGGGACATATCCAGTG
CTTTGGCATTCCCTAGGGATCCAGATTGTAGGCTTATCTAATGGACACAT
ATGTCAAGCCTATGCCCCTGCCATCTGACTCGCATAATTGCAGGCAGCAC
TGCGAGCACTGACATTCACTCTCATGAATTTTAAAAGAGAACAATCCAAT
GACTATAGATTTTTATCTAGCCCCAATCAGCTTTAAAGGGTACCATTTCA
GTTTAGTTAGAGAAATGGATTTTTGTTTTGTGACAAAGCCTTACTATGTG
ACTGTGCCTGGCCTTAAATTTGTACTGAAGCATCTAGATCTGTATCCAGA
GTGCAAGAAGTATGGGGGCAGGGGAGAGTCCCACTCTGCCTGGCAAAGAA
AGTTAAAAGCATAGTGTTAGCTTTGCCACAAATACTGAAAAGAAACAAAG
TGAGAGAACTACAGACTTAATAGTACATACATGGAAATAATGATCATGGA
TCTTAAGCTAGAGTGGGTTTTGCCATGATATAGTTATCTTATACAGGTAA
GCTATGGTAAAATCCCGGAAAGAACAAATACTTAAATAGTATAGACCTGG
TTCAAGAAAAATGAAACTGGACAGAGGGGAAGCCTTCAGTCTTTAATGGC
AATAAAATTTGATAACATTTATTTATCAAACCACATTCCACAGGGTAAAT
GCACAGTGAG

TTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGGACAGAACTTAGGTAGTCAATATT
CCTGACAAATGCCTTTACCTGCTGAGCCATCTTGCTGACCCATAACATCT
ATTCCTTTTCATGAAATGCTTTGAACTCATTGACTGTCACTTTTACAGCT
TTCAGGGGTTCTCTGAAGCCTAAAGAAGACAATTAATTACCCATGTGCTA
CTTTCCTTTCTTTGAAATAGTCATTTAATTTTGATCGCAGACTCTCAGTT
TTTCCATCTGTAAAATGAGAATGAAATCTGTTATTGCTGTTTTGTTATTT
TCACCTCTCAGTACACATTGTTATTTAAAGTCAACTCTTTATCTAGGAGT
TTTGTGAGAGAAGACAATGAGCACCAAGCTGGCTCACTACCTCCTCCCTG
AAACATGCCACATCAAACTTTTCTGGGTGCTAATTACAATATGGATAACT
GAAGATGCTTCATTGAGTAAGCTGACATCTGGAACAAGCTCTGAATTTAA
ACCACTTACTTTTCACAGAATGTTTACAATGTCAATTGAGGCAGAATTAT
TTATCTGAGGACAAATAGAAACCCTGACAAAGTTAAAACACGGCATCCCG
TTGACGAGTTTCCTTGTGAGTACTCTGTGAAATGGATAAATGAGCCTTAA
AAAGTTCCCCCTAAAAAATAACTGCCTTCCCAAGACCGGGGAAAAAAATC
TCTTTTG

Query= MSMg01no523_d19.b1 MSMg01no523_d19.b1 CHROMAT_FILE:
MSMg01no523_d19.b1 PHD_FILE: MSMg01no523_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:05 2005
         (478 letters)



>mm_chr4_93520057_93520934
          Length = 878

 Score =  886 bits (458), Expect = 0.0
 Identities = 470/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtaatggcccaccttcataatttaagttagggacatatccagtgctttggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtaatggcccaccttcataatttaagttagggacatatccagtgctttggca 264

                                                                       
Query: 65  ttccctagggatccagattgtaggcttatctaatggacacatatgtcaagcctatgcccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccctagggatccagattgtaggcttatctaatggacacatatgtcaagcctatgcccc 324

                                                                       
Query: 125 tgccatctgactcgcataattgcaggcagcactgcgagcactgacattcactctcatgaa 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tgccatctgactcgcataattgcaggcagcactgcgagcgctgacattcactctcatgaa 384

                                                                       
Query: 185 ttttaaaagagaacaatccaatgactatagatttttatctagccccaatcagctttaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttaaaagagaacaatccaatgactatagatttttatctagccccaatcagctttaaag 444

                                                                       
Query: 245 ggtaccatttcagtttagttagagaaatggatttttgttttgtgacaaagccttactatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtaccatttcagtttagttagagaaatggatttttgttttgtgacaaagccttactatg 504

                                                                       
Query: 305 tgactgtgcctggccttaaatttgtactgaagcatctagatctgtatccagagtgcaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgactgtgcctggccttaaatttgtactgaagcatctagatctgtatccagagtgcaaga 564

                                                                       
Query: 365 agtatgggggcaggggagagtcccactctgcctggcaaagaaagttaaaagcatagtgtt 424
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtatgggggcaggggagagtgccactctgcctggcaaagaaagttaaaagcatagtgtt 624

                                                                 
Query: 425 agctttgccacaaatactgaaaagaaacaaagtgagagaactacagacttaata 478
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 agccttgccacaaatactgaaaagaaacaaagtgagataactacagacttaata 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_d19.g1 MSMg01no523_d19.g1 CHROMAT_FILE:
MSMg01no523_d19.g1 PHD_FILE: MSMg01no523_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:05 2005
         (424 letters)



>mm_chr4_93688750_93689573
          Length = 824

 Score =  758 bits (392), Expect = 0.0
 Identities = 416/424 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggacagaacttaggtagtcaatattcctgacaaatgcctttacctgctgagccatct 60
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 465 caaggacagaacttaggtagtcaatattactgacaaatgcttttacctgctgagccatct 406

                                                                       
Query: 61  tgctgacccataacatctattccttttcatgaaatgctttgaactcattgactgtcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgctgacccataacatctattccttttcatgaaatgctttgaactcattgactgtcactt 346

                                                                       
Query: 121 ttacagctttcaggggttctctgaagcctaaagaagacaattaattacccatgtgctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttacagctttcaggggttctctgaagcctaaagaagacaattaattacccatgtgctact 286

                                                                       
Query: 181 ttcctttctttgaaatagtcatttaattttgatcgcagactctcagtttttccatctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttcctttctttgaaatagtcatttaattttgatcgcagactctcagtttttccatctgta 226

                                                                       
Query: 241 aaatgagaatgaaatctgttattgctgttttgttattttcacctctcagtacacattgtt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| 
Sbjct: 225 aaatgagaatgaaatctgttattgttgttttgttattttcacctctcagtacatattgtc 166

                                                                       
Query: 301 atttaaagtcaactctttatctaggagttttgtgagagaagacaatgagcaccaagctgg 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 165 atttaaagtcaactctttatctaggagttttgtgagagaaggcaatgagcaccaagctgg 106

                                                                       
Query: 361 ctcactacctcctccctgaaacatgccacatcaaacttttctgggtgctaattacaatat 420
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 105 ctcactacctcctccctgaaacatgccacatcaaactttgctggttgctaattacaatat 46

               
Query: 421 ggat 424
           ||||
Sbjct: 45  ggat 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)