BAC Information

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BAC

Clone NameMSMg01-523L10
Chromosome4 (Build37)
Map Location 20,112,817 - 20,290,147
singlet/doubletdoublet
Overlap geneE130310K16Rik
Upstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523L10.T7 (MSMg01no523_l10.b1)MSMg01-523L10.TJ (MSMg01no523_l10.g1)
ACCAG593965AG593966
length750730
length of high quality
(start - end)		661 (51 - 711)576 (82 - 657)
definitionCHROMAT_FILE: MSMg01no523_l10.b1 PHD_FILE: MSMg01no523_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:43 2005CHROMAT_FILE: MSMg01no523_l10.g1 PHD_FILE: MSMg01no523_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,289,491 - 20,290,147)(20,112,817 - 20,113,392)
sequence
GTTCCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAAATTACAAATCAGAGTGTTAAAAAATACCCTGATGGAA
AATTTTCTGTAATAGAAAGCAGTTATAATTAACTAGATCTTTTATCGTTG
AACTTCACCCTCTCCAAAAACTTTTAAAATGTCCATGTTTTAGAATAATG
AGACAAGAATAATACTATCCCTTTCCATGTATAAAGTGTAAATATACTTG
AAGGGTTACTAAATGATTACCCATAATTCCCCATACACTTATCTATGAGT
CTACTAAGTCTGTAAATATGTGCAGCTTCTTAATGATATGTGTAATTAAT
AAAATATCAGTAACTAAGTCAATTGTGTGCATAGAGCCATTAATGCTATT
CACATGTTTTCAATTTTAGTTCTGCTTCCTCTATATCAGGTAAGGAGTCA
GAATATTTGACAAAATTCTTTAACATCATTTCCCCAAATAAAATATAATT
TCTTACCATCAAAATCATACTATAAGCCTATCAACTAGATCACATCAAAC
AATAAATGAAACAAACTTTGTGAACAAAGGACCAATTCAAGCTCATTGTG
GTGGTTTGCTCAACAATAGCCCCAGGCTCTTATATTTGAATCCTTAGTCA
TCAGGAAGTAACAATACTTAGAAGGATTAGGAGACATGACATTGTAGGGA
TAGGAGTGGCCTTGAAGAAATGTGTTACTGGGGATGGATGTTGACACCTA


TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATTTTGTGATGAAG
TTAATGACCCTCTGATTCTGGTATTAGCACTATTTTTCTGGAAGCATATT
CAACAACTGATATTGGGTATTGCTTTTGGAGAGAGGAACCAATATTCTTT
GATCGAAAGGCCAGGAAGACATGCAAGTATCTGTATTGTATCTCTTCTGT
CCTCTTTGAGAAACAACCACAGTAGCAAGGAATGAGTTGTCAGCACTGAA
CAGAAGAAGGGAACAAGTGAAACCATAACCAGCAAGTGTTGCAGAGAAAC
ATTCTTTGGCTTTTCAATGCCTGATGTCTTTTCTTTGAGTGGTATGTTGT
TTTTTTTAAAGGTGTAAATGGGCCCACCTGCCTTATATGAGTTTAAGTAG
ATATTCCTACACAAGTGGAAATTAGTATATGTGGTTGACATTCAGTTCAG
CTTCACCTTCTAGAGAATTTTACTCCAGGATCACTGTCCAAATAATCAGA
ACACTAGCATCATCCCTGATGAAAACCACTGTCTACCTTATTCTCATGTC
TGATGCCAATAAGTAAGTGGCTGGGGTGGGAATGGATTTGAATGCTGTTG
CATGTTGGTTTCTGATGTAATTCAGTTAACCTTAACAAAGTCAAAGACTT
GCACTGGTCTCATAACTTTATCATGCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_l10.b1 MSMg01no523_l10.b1 CHROMAT_FILE:
MSMg01no523_l10.b1 PHD_FILE: MSMg01no523_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:43 2005
         (661 letters)



>mm_chr4_20289402_20290462
          Length = 1061

 Score = 1224 bits (633), Expect = 0.0
 Identities = 651/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaattacaaatcagagtgttaaaaaataccctgatggaaaattttctgtaata 64
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaattccaaaagaaaaatcagagtgttaaaaaataccctgatggaaaattttctgtaata 687

                                                                       
Query: 65  gaaagcagttataattaactagatcttttatcgttgaacttcaccctctccaaaaacttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaaagcagttataattaactagatcttttatcgttgaacttcaccctctccaaaaacttt 627

                                                                       
Query: 125 taaaatgtccatgttttagaataatgagacaagaataatactatccctttccatgtataa 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 626 taaaatgtccatgttttagaataatgagacatgaataatactatccctttccatgtataa 567

                                                                       
Query: 185 agtgtaaatatacttgaagggttactaaatgattacccataattccccatacacttatct 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agtgtaaatattcttgaagggttactaaatgattacccataattccccatacacttatct 507

                                                                       
Query: 245 atgagtctactaagtctgtaaatatgtgcagcttcttaatgatatgtgtaattaataaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atgagtctactaagtctgtaaatatgtgcagcttcttaatgatatgtgtaattaataaaa 447

                                                                       
Query: 305 tatcagtaactaagtcaattgtgtgcatagagccattaatgctattcacatgttttcaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatcagtaactaagtcaattgtgtgcatagagccattaatgctattcacatgttttcaat 387

                                                                       
Query: 365 tttagttctgcttcctctatatcaggtaaggagtcagaatatttgacaaaattctttaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttagttctgcttcctctatatcaggtaaggagtcagaatatttgacaaaattctttaac 327

                                                                       
Query: 425 atcatttccccaaataaaatataatttcttaccatcaaaatcatactataagcctatcaa 484
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 326 atcatttccccaaataaaatataatttcttaccatcaaaatcatcctataagcctatcaa 267

                                                                       
Query: 485 ctagatcacatcaaacaataaatgaaacaaactttgtgaacaaaggaccaattcaagctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctagatcacatcaaacaataaatgaaacaaactttgtgaacaaaggaccaattcaagctc 207

                                                                       
Query: 545 attgtggtggtttgctcaacaatagccccaggctcttatatttgaatccttagtcatcag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 attgtggtggtttgctcaacaatagccccaggctcttatatttgaatccttagtcatcag 147

                                                                    
Query: 605 gaagtaacaatacttagaaggattaggagacatgacattgtagggataggagtggcc 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gaagtaacaatacttagaaggattaggagacatgacattgtagggataggagtggcc 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_l10.g1 MSMg01no523_l10.g1 CHROMAT_FILE:
MSMg01no523_l10.g1 PHD_FILE: MSMg01no523_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:43 2005
         (576 letters)



>mm_chr4_20112617_20113592
          Length = 976

 Score = 1013 bits (524), Expect = 0.0
 Identities = 563/576 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttattttgtgatgaagttaatgaccctctgattctggtattagcactatttttctgg 60
           |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 cttttattttgtgatgaagtcaatgaccctatgattctggtattagcactatttttctgg 260

                                                                       
Query: 61  aagcatattcaacaactgatattgggtattgcttttggagagaggaaccaatattctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcatattcaacaactgatattgggtattgcttttggagagaggaaccaatattctttg 320

                                                                       
Query: 121 atcgaaaggccaggaagacatgcaagtatctgtattgtatctcttctgtcctctttgaga 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcgaaaggccgggaagacatgcaagtatctgtattgtatctcttctgtcctctttgaga 380

                                                                       
Query: 181 aacaaccacagtagcaaggaatgagttgtcagcactgaacagaagaagggaacaagtgaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 381 aacaaccacagtagcaaggaatgagttgtcagcactgaacagaagaggggagcaagtgaa 440

                                                                       
Query: 241 accataaccagcaagtgttgcagagaaacattctttggcttttcaatgcctgatgtcttt 300
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 accataaccagcgagtgttgcagagaaacattctttggcttttcaatgtctgatgtcttt 500

                                                                       
Query: 301 tctttgagtggtatgttgttttttttaaaggtgtaaatgggcccacctgccttatatgag 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttgagtggtatgttgtttttattaaaggtgtaaatgggcccacctgccttatatgag 560

                                                                       
Query: 361 tttaagtagatattcctacacaagtggaaattagtatatgtggttgacattcagttcagc 420
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 cttaagtagatattcctacacaagtggaaattagtatatgtgtttgacattcagttcagc 620

                                                                       
Query: 421 ttcaccttctagagaattttactccaggatcactgtccaaataatcagaacactagcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaccttctagagaattttactccaggatcactgtccaaataatcagaacactagcatc 680

                                                                       
Query: 481 atccctgatgaaaaccactgtctaccttattctcatgtctgatgccaataagtaagtggc 540
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 681 atccctgatgaaaaccactgtctaccttattctcatggctgatgccaataagtaggtggc 740

                                               
Query: 541 tggggtgggaatggatttgaatgctgttgcatgttg 576
           |||||||| |||||||||||||||||||||||||||
Sbjct: 741 tggggtggaaatggatttgaatgctgttgcatgttg 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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