XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTCT
TGGTCTGCGTACTAAGAGAGTTTTCCTTTGAGAATTTTCCTGATCTGGCT
CCCTAGTTACACTTCACATTACATATTGCATATGTAATTGCACTGAGAAT
GTGCTGGCCAGACTCCTCATCTGTAAAACTGTTGGGACACATACCAGAAG
TTGGCAATGTTTCATGCTGATAGTCTTAATGATGTCAATGTATCAAATTG
AGATTATTGTAGAGATCTAAAGTAGCTACCTTATTTGAGAGGAATACTGG
TCACTTTGAAGGTGATAAATGCATTCAAAAATCTAAAAGAAAGAGCAAGA
AAATGGTATTAATTTGAGTTTTCATGAGTTACTTAAGGTATTTTCAAAGA
TCTGTAACTAAATGTAAGTACTTCTCTTCTAAATTATTATTTATTTCTAG
TCATTTAGTCCTTCAAAAATCGTGAGGAAGAAAAGTATTACAGCTTATTC
TCCTACTACTGGAACTTATCAATTGAGCCCATTTTCTTCTCCCGCAACCC
CCAAAGAACAGGAGCACAGAAACGGACCATCAAATGGTTAGTTGAACATT
CTTTTCCACTTATGGTAACATCTTTCTAGTTATTGGTTAAATCAAGATTT
TGATTTAGGAATATATAGCTCTTGTTGCAGCTGGGTTTTTCTCTCTTCTC
AAGGAATTTAACATAGAAAAGGCTAGAGTGTAAATGTTACTTTGGACATA
AATGTAAACTTCGTAGTCACN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTATTCACAGAAACCACCAAAAATATGTGGGGG
AGGTTGGAGTGGAAAATAAGAACGATGTGCAATAATAAATATGAATAACA
ATGTCATCGTAACTGGGAGAGAAGGAACACACCTGTAATTCCAGTGTTTG
GCAGGGAGAGGGAAGCTGGAGAATCAGAAGTTCAAAGTCACCCTCAGCTA
TGTAACTAGTTCAAAGGCAGCCTGGGGTGCACGAGATTGTGTCTGAGGGG
GGGGGAGAGGGGGAGAGAAATCTAAANANATGTTTTGATTTTGTTTTANT
ATTTTTTTTGTATTTTTTTGATTTTTTTTGTTAAATTAGGTGAATTATGT
TATAAGATTATTTGTATAAATTATGATTTTTATTGTTTGTTAAATTTTTA
TTATATTGTTTTTTTGGTTAGTTGTTATTTTTATGTGTTTTATTATATTG
ATTTTATTTTTTATTTTTTTTATTAAGTTTATTATATTTATATAGGTTTT
ATTTTGATTGCTCTTTTTATATATTATTTTATTAATTTGTATAATAGAAT
TATTTTTTGGTTTTAAATATTATATTAGTATATGTTTTAGTTGTTTTAAT
ATAAATGTTGGCGTATATCGTTTGAATATATCCCATTTACATATTTTTCA
CTTTATTTTCATATTTCTATTTTTTTAGTTTTTTCTTCGTTCGTTTATTT
CGTTTCCGTTCTCTTAGTAGCTTATCTATGACAATCTGTTAATTAGCGCG
TCA

Query= MSMg01no524_l03.b1 MSMg01no524_l03.b1 CHROMAT_FILE:
MSMg01no524_l03.b1 PHD_FILE: MSMg01no524_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:02 2005
         (665 letters)



>mm_chr4_99468471_99469535
          Length = 1065

 Score = 1255 bits (649), Expect = 0.0
 Identities = 658/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttcttggtctgcgtactaagagagttttcctttgagaattttcctgatctgg 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 865 gaattcccttcttggtctgcgtactaagagagctttcctttgagaattttcctgatctgg 806

                                                                       
Query: 65  ctccctagttacacttcacattacatattgcatatgtaattgcactgagaatgtgctggc 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 805 ctccctagttacacttcacattacatattgcatatgtaattgcacggagaatgtgctggc 746

                                                                       
Query: 125 cagactcctcatctgtaaaactgttgggacacataccagaagttggcaatgtttcatgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagactcctcatctgtaaaactgttgggacacataccagaagttggcaatgtttcatgct 686

                                                                       
Query: 185 gatagtcttaatgatgtcaatgtatcaaattgagattattgtagagatctaaagtagcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatagtcttaatgatgtcaatgtatcaaattgagattattgtagagatctaaagtagcta 626

                                                                       
Query: 245 ccttatttgagaggaatactggtcactttgaaggtgataaatgcattcaaaaatctaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttatttgagaggaatactggtcactttgaaggtgataaatgcattcaaaaatctaaaa 566

                                                                       
Query: 305 gaaagagcaagaaaatggtattaatttgagttttcatgagttacttaaggtattttcaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaagagcaagaaaatggtattaatttgagttttcatgagttacttaaggtattttcaaa 506

                                                                       
Query: 365 gatctgtaactaaatgtaagtacttctcttctaaattattatttatttctagtcatttag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatctgtaactaaatgtaagtacttctcttctaaattattatttatttctagtcatttag 446

                                                                       
Query: 425 tccttcaaaaatcgtgaggaagaaaagtattacagcttattctcctactactggaactta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccttcaaaaatcgtgaggaagaaaagtattacagcttattctcctactactggaactta 386

                                                                       
Query: 485 tcaattgagcccattttcttctcccgcaacccccaaagaacaggagcacagaaacggacc 544
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagttgagcccattttcttctcccgcaacccccaaagaacaggagcacagaaacggacc 326

                                                                       
Query: 545 atcaaatggttagttgaacattcttttccacttatggtaacatctttctagttattggtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcaaatggttagttgaacattcttttccacttatggtaacatctttctagttattggtt 266

                                                                       
Query: 605 aaatcaagattttgatttaggaatatatagctcttgttgcagctgggtttttctctcttc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatcaagattttgatttaggaatatatagctcttgttgcagctgggtttttctctcttc 206

            
Query: 665 t 665
           |
Sbjct: 205 t 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)