XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GCAGCAAGCTTATATGCTAAAATGCTGTATTTCAGACTCTCTTTGGAATA
ATTCAAAAATATTTAGGAATGATATAAGGATCAACATTTCCTATTCTGTA
CCTACACCCGCACATGCACACACAGAGAGTATGGATGTGTCAACCTCTAT
TTATCTTATTGCTTTGAACTTGGTACTCTACTCTTGAATCTCAGACAGCC
CTGCTCAAGTTCTGTGAAATTGTATATGGGATATTTCTAAAATTTTCTAA
ATTATGGTTCTTTACTTTTCAACACTATAGACTAAAGAGAAAATAGGTTT
TCTTTAGAAATTTGCAGTTTTAAGTGCTTCTTGGCCATTTGAGGCGCCTC
TGTTGTGAATTCTCTCTTTAGCTCTCTACTCCACTTTTGATTGGATTGTT
TGGCTTTTTGGAGGTTAGTTTCTTGAGTTCTTTATGTATTTTGGATATTA
GCCCTCTATTAGAGGTGGGGATAATGAAGACCCCCCCCCATCTGTAGGTT
GCCGATTTGTCCTATTGACTCTTGCTTTTGCCTTACAGAAGCTTTTTAGT
TTCATGAGGTCCCATTTCTCAATTCTTGATCTTAGAGCCTAAGCCATTGG
AGTTATATTTAAGAAATTTCTCTCCCCACCCATACTAACGAGCTGGAGGT
TCTTTCAGAATTTCTCTTCTACTAAATTCAGTGCATCTGGGTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCGGTGAAGTAGC
TGGATATAAAATTAATTCAAACAAGCCAATGCCCTTTCTGTACACAAAGG
ATAAACAGGCTGAGAAAGAAATTAGGGAAATAACACCCTTCTCAATACTC
ACAAATGATATAAAATACCTTGGTGTGACTCTAAGTAAGGAAGTGAAAGA
TCTTTATGATAAGAACTTTGAATCTCTGAAGAAAGAAATTAAAGAAGATC
TCAGAAGATGGAAAGATTTCCCATGCTCATGGATTGGCAGGATCAATATA
GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC
CATAAAAATTCAAACTTAATTCTTCAATGAATTAGAAAGGGCAATCTGCA
AATTCATCTGGAGTAACAAAAAACCTAGGATAGCAAAAACTCTGCTCAAG
GATAAAAAAACCTCTGGTTGAATCACCATGCCTGACCGAAAGCTGAGCAA
TTGTGATGAAAGTGCATGGTACTGGTATAGCCACAGACAAGTAGAAAAAT
GGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCATTTG
ATATTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATATT
CAACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAGA

Query= MSMg01no525_a05.b1 MSMg01no525_a05.b1 CHROMAT_FILE:
MSMg01no525_a05.b1 PHD_FILE: MSMg01no525_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:28 2005
         (657 letters)



>mm_chr4_51776781_51777837
          Length = 1057

 Score =  849 bits (439), Expect = 0.0
 Identities = 494/513 (96%), Gaps = 5/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcagcaagcttatatgctaaaatgctgtatttcagac-tctctttggaataat 63
           ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct: 512 gaattctgcagcaagcttatacgctaaaatgctgtatttcagacgt-tctttggaataat 454

                                                                       
Query: 64  tcaaaaatatttaggaatgatataaggatcaacatttcctattctgtacctacacccgca 123
           ||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct: 453 tcaaaaatacttaggaatgatataaggatcaacatttcctattctatacctatacccaca 394

                                                                       
Query: 124 catgcacacacagagagtatggatgtgtcaacctctatttatcttattgctttgaacttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catgcacacacagagagtatggatgtgtcaacctctatttatcttattgctttgaacttg 334

                                                                       
Query: 184 gtactctactcttgaatctcagacagccctgctcaagttctgtgaaattgtatatgggat 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 333 gtactctactcttgaatctcagacagtcctgctcaagttctgtgaaattgtatatgggat 274

                                                                       
Query: 244 atttctaaaattttctaaattatggttctttacttttcaacactatagactaaagagaaa 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 273 atttctaaaattttctaaattatggttctttacttttcaaccctatagactaaagagaaa 214

                                                                       
Query: 304 ataggttttctttagaaatttgcagttttaagtgcttcttggccatttgaggcgcctctg 363
           |||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||| 
Sbjct: 213 ataggttttccttaggaatttgcagttttaagtgcttcttggccatttgagactcctctt 154

                                                                       
Query: 364 ttgtgaattctctctttagctctctactccacttttgattggattgtttggctttttgga 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 153 ttgtgaattctctctttagctctctactccacttttgattggattgtttggccttttgga 94

                                                                       
Query: 424 ggttagtttcttgagttctttatgtattttggatattagccctctattagaggtggggat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 93  ggttagtttcttgagttctttatgtattttggatattagccctctattagatgtggggat 34

                                            
Query: 484 aatgaaga--ccccccccca-tctgtaggttgc 513
           ||||||||  |||||||||| ||||||||||||
Sbjct: 33  aatgaagatccccccccccaatctgtaggttgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)