Query= MSMg01no525_a11.b1 MSMg01no525_a11.b1 CHROMAT_FILE:
MSMg01no525_a11.b1 PHD_FILE: MSMg01no525_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:29 2005
(613 letters)
>mm_chr4_3640391_3641403
Length = 1013
Score = 1102 bits (570), Expect = 0.0
Identities = 605/622 (97%), Gaps = 9/622 (1%)
Strand = Plus / Plus
Query: 1 ataccattacattaagaaacttttctggtgtttatgtgtctactaacaaatgaaagttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataccattacattaagaaacttttctggtgtttatgtgtctactaacaaatgaaagttcc 260
Query: 61 aggtgggacctgatttccccatactatggcctttttctgctttacagcaggaaaatggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgggacctgatttccccatactatggcctttttctgctttacagcaggaaaatggtt 320
Query: 121 gttttaaagcaagagtcttttagccaaaatcctttgagtttttcccgattcttaatgaag 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gttttaaagcaagagtcttttagccaaaatccttcgagtttttcccgattcttaatgaag 380
Query: 181 tagggtggggtttggctcagtttttggtgtagctatacctaaaagtaaaataactttggg 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagggtggggtttggctcagtgtttggtgtagctatacctaaaagtaaaataactttggg 440
Query: 241 aattaacatttattgataatttattataaaccaaaaaaatatggccataaaagtatgggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaacatttattgataatttattataaaccaaaaaaatatggccataaaagtatgggt 500
Query: 301 tctacttataagctttttataaaccacaaaacatagttcatagaatttctgagtctgctt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tctacttataagctttttataaaccacgaaacatagttcatagaatttctgagtctgctt 560
Query: 361 tgattcaataaatggtgcttggccactgccttggtgacaggtagccgttgtggtggtgca 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgattcagtaaatggtgcttggccactgccttggtgacaggtagccgttgtggtggtgca 620
Query: 421 gactgcatggtctcctttctctgtttaaggtacctgcaaggagcatggaagtagacaatt 480
| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ggctgcacggtctcctttctctgtttaaggtacctgcaaggagcatggaagcagacaatt 680
Query: 481 gtttgcccagagacctagaaactagtgattttgtttgtgtcagagttcaagatgcctctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttgcccagagacctagaaactagtgattttgtttgtgtcagagttcaagatgcctctc 740
Query: 541 ttcacttaggtatgatgatgtcacagaggtgacagaggtga---------agttgcgcct 591
|||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 ttcacttaagtatgatgatgtcacagaggtgacagaggtgacagaggtgaagttgcgcct 800
Query: 592 gccctcagggtgtgtgcagtgg 613
||||||||||||||||||||||
Sbjct: 801 gccctcagggtgtgtgcagtgg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_a11.g1 MSMg01no525_a11.g1 CHROMAT_FILE:
MSMg01no525_a11.g1 PHD_FILE: MSMg01no525_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:29 2005
(655 letters)
>mm_chr4_3786599_3787652
Length = 1054
Score = 1220 bits (631), Expect = 0.0
Identities = 649/655 (99%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 1 ttacaaagagggaaagctaagggtctatgggacaggagagggcatgcagaagacatttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ttacaaagagggaaagctaagggtctatgggacaggagagggcatgcagaagacatttaa 795
Query: 61 agagaaaggcaggggggcagggaacatgggtgacaggactagaagcttgtgctcttccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agagaaaggcaggggggcagggaacatgggtgacaggactagaagcttgtgctcttccaa 735
Query: 121 gaggccaaagtgtggcacttccttgatttagaattggaggtagattttcctgctttcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaggccaaagtgtggcacttccttgatttagaattggaggtagattttcctgctttcagg 675
Query: 181 agcagtgacgtacaggagaacatgctgtacagcagtccaagaaaacatttgtcaaatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agcagtgacgtacaggagaacatgctgtacagcagtccaagaaaacatttgtcaaatgct 615
Query: 241 gaggaaggcttaggtcccagagaactggggagtcctgccatagagccctctgaagaataa 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 614 gaggaaggcttaggtcccagagaactggggagtcctgccatagaaccctctgaagaataa 555
Query: 301 atcatgtatgtgttttctcatattgtttaaatgctgtggcaaaggggtgacttagtagat 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 554 atcatgtatgtgttttctcatattgtttaaatgctgtggcaaaggggtgaattagtagat 495
Query: 361 cctgcagccatcattaatgatttacctcagtgtattttccataattacttatgacttgca 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 494 cctgcagccatcattaatgatttacttcagtgtattttccataattacttatgacttgca 435
Query: 421 gctattgtgattttagccataataattcctcaccagggctattctgtacacccagacagt 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gctattgtaattttagccataataattcctcaccagggctattctgtacacccagacagt 375
Query: 481 tgaattgggtcttggctgtgcagtaagaatgttattcccgagtttctcttggctttcttg 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 374 tgaattgggtcttggctgtgcagtaagaatgttattcccgggtttctcttggctttcttg 315
Query: 541 gtagtcatgctttggctcatacttgttagcatctttctggaatgttagagaaagtttcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtagtcatgctttggctcatacttgttagcatctttctggaatgttagagaaagtttcaa 255
Query: 601 atttagtcaacaatgtatttcctaaagcagcactatcctttcttgcctttaatta 655
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 254 atttagtcaacaatgtatttcctaaagcagcactatccttt-ttgcctttaatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space: 673380
Effective search space used: 673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
