XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACT
AAGTCACATTTCAAGAGTTTTGGGATCTATCTGGGGATCAACAACATTGA
AGTTTAGATATACAAATGTGTTTTTTTACTTTCTTCTCCACCTTTCATTG
AACTGTGATGTCTGCTTATTGTTATTATTACTATTTTCCCTTTTCTTCTC
ACAATGGTTGTAGATATTAGAGAAATGTCAATGACTGAATAAAGTTTGTC
TTCATGGCCCATAAATTCTGCATAGTTGTCCCATTTGTGAGAAAAGAGTA
TGATGTAAGTTCAGAGAATCATTACTTGGAAATAATAAATGTTGTTAACA
TGATAAAATTTATTGGAAAACTATTTTAAATCAAAGTACAAGAAAAACTA
TTTTAGGAAATCATATTCATTGCTAAATCCTGAATAATGAGATGAAGAAA
GAAACTAGGCTAAAATCGGAAGAAAGGTTGTCCAAGGTCAACAGTACTAT
TCCTATCAAGTCCCTGAGTTATCACTGAAGCTGATAGTTTTTAACTGACA
CATTGAAAGTCAGTGCAACTAAAGTTGAAAAGGAGAGTTTAATACTAATT
GGGGGTTAATTGCAAGAGGCCAGGTTAGGTGAATCTTGTAGGCCCAGGCA
AGGAGTTTTCGATTAAATGGGAAGGCTTCTTAATTTGAAGCTCTAAATAA
GGAAGTAACGTGTCTCTCATTTTAAGCTGTGACTTTGGGTAATGGAGN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCTACACTGGAGCATCGACCCTACACAGGACCA
AGGGCCACTCTTCCCATTGATGCCCAACAAAGTCATCCTCTGCTACATAT
GCAGCTGGAGCCATGGGCTGCTCCATGTGAATTCTTTGGTTGAAGGAAGC
TCTGGGGGGGGGGGGGGTGGCGCGTCGGGTTGGTTGATACTGTTGAAAAC
CCCTTCAGCTCCTTAAGTTCTTTCTCTAACTCCTTCATTGGGGACCCTGT
GCTCAGTCCAATAGTTGGCCGTAAGCATCCACTTCTGTATTTGTCAGGCT
CTGGCAGAGCATCTCAGCAGACTGTTATATCAGGCACCACTCAGCAAGCA
TTTCTTGGCATTTTTAAGTTCGGTTAGATCATATCACTCAATATTCAATG
GGAACCAAGTCCACTAAGGTAAAAAGCCTAGGTCTTTCCAAGGCCCAAAA
CCATCTTCAGGACTGACATCTCATTATCCATTCTCACTTATTAGCCCTGG
GTTTCCTTACATCACCTCAAGTAGCCTATACACAAACTTTACTTTTTCTG
CTTCCTTTGCCTGAAATGTTCTTTCGCCAAATAATTGTATGAATTTCTTC
ATATCCCTTTTTTGCTTCTTACGAGATAAATCCTAATTCTTGTTATCCAT
AAGCCCTCCCAGAATCTATACAGTTAGTATTTTTGGGTTCTCTTCAACTA
CCTTG

Query= MSMg01no525_n12.b1 MSMg01no525_n12.b1 CHROMAT_FILE:
MSMg01no525_n12.b1 PHD_FILE: MSMg01no525_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:35 2005
         (579 letters)



>mm_chr4_28729255_28730234
          Length = 980

 Score = 1098 bits (568), Expect = 0.0
 Identities = 574/576 (99%), Gaps = 1/576 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctactaagtcacatttcaagagttttgggatctatctggggatcaacaacattga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattctactaagtcacatttcaagagttttgggatctatctggggatcaacaacattga 721

                                                                       
Query: 65  agtttagatatacaaatgtgtttttttactttcttctccacctttcattgaactgtgatg 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 agtttagatatacaaatatgtttttttactttcttctccacctttcattgaactgtgatg 661

                                                                       
Query: 125 tctgcttattgttattattacta-ttttcccttttcttctcacaatggttgtagatatta 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctgcttattgttattattactatttttcccttttcttctcacaatggttgtagatatta 601

                                                                       
Query: 184 gagaaatgtcaatgactgaataaagtttgtcttcatggcccataaattctgcatagttgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gagaaatgtcaatgactgaataaagtttgtcttcatggcccataaattctgcatagttgt 541

                                                                       
Query: 244 cccatttgtgagaaaagagtatgatgtaagttcagagaatcattacttggaaataataaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cccatttgtgagaaaagagtatgatgtaagttcagagaatcattacttggaaataataaa 481

                                                                       
Query: 304 tgttgttaacatgataaaatttattggaaaactattttaaatcaaagtacaagaaaaact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgttgttaacatgataaaatttattggaaaactattttaaatcaaagtacaagaaaaact 421

                                                                       
Query: 364 attttaggaaatcatattcattgctaaatcctgaataatgagatgaagaaagaaactagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attttaggaaatcatattcattgctaaatcctgaataatgagatgaagaaagaaactagg 361

                                                                       
Query: 424 ctaaaatcggaagaaaggttgtccaaggtcaacagtactattcctatcaagtccctgagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctaaaatcggaagaaaggttgtccaaggtcaacagtactattcctatcaagtccctgagt 301

                                                                       
Query: 484 tatcactgaagctgatagtttttaactgacacattgaaagtcagtgcaactaaagttgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tatcactgaagctgatagtttttaactgacacattgaaagtcagtgcaactaaagttgaa 241

                                               
Query: 544 aaggagagtttaatactaattgggggttaattgcaa 579
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaggagagtttaatactaattgggggttaattgcaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space:   551930
Effective search space used:   551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)