Query= MSMg01no526_e23.b1 MSMg01no526_e23.b1 CHROMAT_FILE:
MSMg01no526_e23.b1 PHD_FILE: MSMg01no526_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:11 2005
(659 letters)
>mm_chr4_29217106_29218163
Length = 1058
Score = 1054 bits (545), Expect = 0.0
Identities = 606/643 (94%), Gaps = 29/643 (4%)
Strand = Plus / Minus
Query: 45 tttatcaccaggaaatttgtcttttctttcccagcgaagatcatacctaatttcagatga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 tttatcaccaggaaatttgtcttttctttcccagcgaagatcatacctaatttcagatga 999
Query: 105 taaaaacaatttctctccccccctt----cacacacacacacacacacgagagagagaga 160
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 998 taaaaacaatttctctcccccccttcacacacacacacacacacacacgagagagagaga 939
Query: 161 g--------------------acagacagacagacagacagacagagagagagagaaaca 200
| ||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 938 gagagagagagagagagagacacagacagacagacagagagagagagagagagagagaca 879
Query: 201 g----agagagagagagagatgcacacatatgtgtgcaaacatatattgagcccagttca 256
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gagacagagagagagagagatgcacacatatgtgtgcaaacatatattgagcccagttca 819
Query: 257 cagtaattgacctgagtgatactgtttacccactggacagccattttgtgttgactttgt 316
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 818 cagtaattgacctgagtgatactgtttacccactggacagtcgttttgtgttgactttgt 759
Query: 317 gctctacttggctgtgaagtacataggagccaaaagcagcacagcaggggaaactacgag 376
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gctctacttggctgtggagtacataggagccaaaagcagcacagcaggggaaactacgag 699
Query: 377 taaatatacactcaacaaaataactaatcaagatgtaattctgccagagtaaaattcttc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 taaatatacactcaacaaaataactaatcaagatgtaattctgccagagtaaaattcttc 639
Query: 437 catgcaatcctgatgtaaatttcaaagactgtagaaactaacacttgggcaacgaagaaa 496
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 638 catgcaatcctgatgtaaatttcaaagactgtagaaactaacacttgggcaatgaagaaa 579
Query: 497 agatcaacactatgagagccaggggagttctgagaatgtaaatggacaggagacctcttc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agatcaacactatgagagccaggggagttctgagaatgtaaatggacaggagacctcttc 519
Query: 557 atactggaagtaaaaaaaaaaatgtgttttcttgtctaaacaagatagttgatctctggt 616
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 518 atactggaagtaaaaaaaaaaatgtgttttcttttctaaacaagatagttgatctctggt 459
Query: 617 tatattcaggggaaaaaacctaaagaattatagccaagaatgg 659
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 458 tatattcagggg-aaaaacctaaagaattatagccaagaatgg 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_e23.g1 MSMg01no526_e23.g1 CHROMAT_FILE:
MSMg01no526_e23.g1 PHD_FILE: MSMg01no526_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:11 2005
(552 letters)
>mm_chr4_29057927_29058876
Length = 950
Score = 955 bits (494), Expect = 0.0
Identities = 537/564 (95%), Gaps = 24/564 (4%)
Strand = Plus / Plus
Query: 1 tcttcccttttgaagggctaaagggagaaaagttcattaagatgcatgctttttaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcccttttgaagggctaaagggagaaaagttcattaagatgcatgctttttaatttg 260
Query: 61 tttcaaagttacatctgggcacttcaattactgaccatacttgtgtttataatttctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaaagttacatctgggcacttcaattactgaccatacttgtgtttataatttctcag 320
Query: 121 gactcttagctttcaagaggggttttttatattaattttgactgttcgtttaaaaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactcttagctttcaagaggggttttttatattaattttgactgttcgtttaaaaaaa-- 378
Query: 181 taccagatagttaatgagttttaataacaaaacaaatactggattaagctttagataaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taccagatagttaatgagttttaataacaaaacaaatactggattaagctttagataaat 438
Query: 241 taatttcagagaatcaaatacttatctgtgcagtagttgtatcttatttgcttttaatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taatttcagagaatcaaatacttatctgtgcagtagttgtatcttatttgcttttaatat 498
Query: 301 aaatttaaaatcaatatttactgcatttgagatgtgttagcattcattttgaaagtcgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaatttaaaatcaatatttactgcatttgagatgtgttagcattcattttgaaagtcgta 558
Query: 361 tattcaaaaaataaaaagagcggacagaagcttgttttacctagttttgaggcattttaa 420
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 t-ttcaaaaaataaaaagagcagacagaagcttgttttacctagttttgaggcattttaa 617
Query: 421 gcatatttcataaaatggaaagtaaatgaaactataatgtcactggtgtattttatctaa 480
|||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 618 gcatatttcagaaaatggaaagtaaatgaaactataatgt---------attttatctaa 668
Query: 481 tacattaatacaaaa-----------att-atgtttaaatacccaatatccatatggcat 528
||||||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct: 669 tacattaatacaaaatttatgtttaaatttatgtttaaatacccaatatccatatgacat 728
Query: 529 ttgaagtaaaatgaacatgtgatt 552
||||||||||||||||||||||||
Sbjct: 729 ttgaagtaaaatgaacatgtgatt 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 950
Length adjustment: 10
Effective length of query: 542
Effective length of database: 940
Effective search space: 509480
Effective search space used: 509480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
