Query= MSMg01no526_h19.b1 MSMg01no526_h19.b1 CHROMAT_FILE:
MSMg01no526_h19.b1 PHD_FILE: MSMg01no526_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:25 2005
(634 letters)
>mm_chr4_126994949_126995982
Length = 1034
Score = 1104 bits (571), Expect = 0.0
Identities = 618/637 (97%), Gaps = 7/637 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgccagcctttctctttgcttcccctgccccattacactggaagcatcttacg 64
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatgcctgcctgcctttctctttgcttcccctgccccattacactggaagcatcttacg 264
Query: 65 ggcaggcaagcaacacaaagcaggataccaggcctgtagatgaaattaccaattcagcat 124
|||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 265 ggcaggcaagcagcgcaaagcagggcaccaggcctgtagatggaattaccaattcagcat 324
Query: 125 acgcttactgggtgctttctgatgctgtaacactgtccggacactgtcggcagccagaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acgcttactgggtgctttctgatgctgtaacactgtccggacactgtcggcagccagaga 384
Query: 185 acacgagagattcttagcctcctggattttactttctagctgtgagaagacagaaaagac 244
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 acacaagagattcttagcctcctggactttactttctagctgtgagaagacagaaaagac 444
Query: 245 aacaaaaca-----ccaaaaataaaatacaaaaaaaaaa--tggttagtgattcaaacaa 297
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 aacaaaacaaaacaccaaaaataaaatacaaaaaaaaaaaatggttagtgattcaaacaa 504
Query: 298 atatggtggcggggtgggggtagggaacatgaggcacagagcacacggagtatccagttt 357
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatggtggcggggtgggtgtagggaacatgaggcacagagcacacggagtatccagttt 564
Query: 358 caagttcctatagaagagaaatttgcaccaaacagttgccacagaggctgagcctctaag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caagttcctatagaagagaaatttgcaccaaacagttgccacagaggctgagcctctaag 624
Query: 418 gaagaaggaagtcccatagctgcctaggcattccaggtgcagagaacctgggtgtcaagt 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaagaaggaagtcccatggctgcctaggcattccaggtgcagagaacctgggtgtcaagt 684
Query: 478 tcctgaggcaggggtgtgccttggtgtctcctccctgaggggcaatgaggaggtcggcgt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcctgaggcaggggtgtgccttggtgtctcctccctgaggggcaatgaggaggtcggcgt 744
Query: 538 gactgagacaggtgattgaaaaggagttgaagaaggtgaaaggctagttgtcgggtaggg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gactgagacaggtgattgaaaaggagttgaagaaggtgaaaggctagttgtcgggtaggg 804
Query: 598 cggataccgacaggccctgtcagagatgacttttgat 634
||||||||| |||||||||||||||||||||||||||
Sbjct: 805 cggataccgtcaggccctgtcagagatgacttttgat 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_h19.g1 MSMg01no526_h19.g1 CHROMAT_FILE:
MSMg01no526_h19.g1 PHD_FILE: MSMg01no526_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:25 2005
(583 letters)
>mm_chr4_127171806_127172788
Length = 983
Score = 1120 bits (579), Expect = 0.0
Identities = 582/583 (99%)
Strand = Plus / Minus
Query: 1 tccagcatgcatctgcaggagccgtgggccagttggtaatatgctgctgagcagtgtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tccagcatgcatctgcaggagccgtgggccagttggtaatatgctgctgagcagtgtagt 724
Query: 61 gagatgagagacagaagcatcggactggcaacctgggggctgacgatgaccccaggagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gagatgagagacagaagcatcggactggcaacctgggggctgacgatgaccccaggagga 664
Query: 121 gccatgtcagtggcattataaaaatcaaagcagctgcaagtgtgtgaagggtagagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gccatgtcagtggcattataaaaatcaaagcagctgcaagtgtgtgaagggtagagagag 604
Query: 181 gcacaaaggagaagactgtgaatcccatcacatcctttgagttttgctgtgaaaggcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gcacaaaggagaagactgtgaatcccatcacatcctttgagttttgctgtgaaaggcaga 544
Query: 241 gggatgggcaagccagcgctgaggtgtgaggtcaagggaagagacctccacttgaccgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gggatgggcaagccagcgctgaggtgtgaggtcaagggaagagacctccacttgaccgct 484
Query: 301 ttcttgttgtgaaatgtatgcaacattccaaaacacaactctagcctgtgtgaactgtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttcttgttgtgaaatgtatgcaacattccaaaacacaactctagcctgtgtgaactgtgg 424
Query: 361 agggagcaccagagtcttatgtgctaatgggaagaagccaagaaagtgatactacaggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agggagcaccagagtcttatgtgctaatgggaagaagccaagaaagtgatactacaggag 364
Query: 421 agagggggctgttctcagcaacaaagtccttgagaaggtgagaaagcatggagaagcagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agagggggctgttctcagcaacaaagtccttgagaaggtgagaaagcatggagaagcagg 304
Query: 481 gaccaagcagaggggccgcctctgttgagaatagagacgcgtcttccatcgtaacgggag 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 303 gaccaagcagaggggccgcctctgttgagaatagagacacgtcttccatcgtaacgggag 244
Query: 541 gtttgtcaatttgtgattgggagacatgggagttcttgtctga 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtttgtcaatttgtgattgggagacatgggagttcttgtctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
