Query= MSMg01no526_j11.b1 MSMg01no526_j11.b1 CHROMAT_FILE:
MSMg01no526_j11.b1 PHD_FILE: MSMg01no526_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:33 2005
(426 letters)
>mm_chr4_124821307_124822132
Length = 826
Score = 690 bits (357), Expect = 0.0
Identities = 397/423 (93%), Gaps = 20/423 (4%)
Strand = Plus / Plus
Query: 4 ggaattcactctatgtttgccaacttgccacaatcctcctgccctgtcttcctgagcgtt 63
||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 224 ggaattcactctatggttgccaactcgccacaatcctcctgccctgtcttcccgagcgct 283
Query: 64 ggggctgcagacatgagccattgcgcctgttgttgtctatgtgcatgttgagtaactcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggggctgcagacatgagccattgcgcctgttgttgtctatgtgcatgttgagtaactcct 343
Query: 124 tcctctttcctgcaaggntgttttttttttttttttttttttttttgattgggtaaaatg 183
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 344 tcctctttcctgcaagg--------------------tttttttttgattgggtaaaatg 383
Query: 184 gagcaggccactggaaaggtcctttggcaatctgtgtttcctctcatacttgtgttgtta 243
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagcaggccactggagaggtcctttggcaatctgtgtttcctctcatacttgtgttgtta 443
Query: 244 gggtatgtgtcttggatgttgggaggggaaaaaatctaaataaataaaaagaatgcagct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggtatgtgtcttggatgttgggaggggaaaaaatctaaataaataaaaagaatgcagct 503
Query: 304 ttctcttcttcatgaagtccatccaatccactgaacccatcagtggtggcctttcacctt 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 ttctcttcttcatgaagtccatccaatccaatgaacccatcagtggtggcctttcacctt 563
Query: 364 gagcccccctcccgtctgaaacggaatggaggaaggctattaaactgcgtttaacaaatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagcccccctcccgtctgaaacggaatggaggaaggctattaaactgcgtttaacaaatt 623
Query: 424 cag 426
|||
Sbjct: 624 cag 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_j11.g1 MSMg01no526_j11.g1 CHROMAT_FILE:
MSMg01no526_j11.g1 PHD_FILE: MSMg01no526_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:34 2005
(619 letters)
>mm_chr4_124965220_124966242
Length = 1023
Score = 1147 bits (593), Expect = 0.0
Identities = 614/623 (98%), Gaps = 4/623 (0%)
Strand = Plus / Minus
Query: 1 ttgagacctcctcgtctgatagcaaaagcactgtgtagataatttattgctacccaggag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ttgaaacctcctcgtctgatagcaaaagcactgtgtagataatttattgctacccaggag 764
Query: 61 gtagaatgactgaggctcatgacctgctaggggacacacagtcaagataggatcttgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gtagaatgactgaggctcatgacctgctaggggacacacagtcaagataggatcttgagc 704
Query: 121 atcgggtacagcccagtgggtgcccacctcttcccaactcctttccagctccatttgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atcgggtacagcccagtgggtgcccacctcttcccaactcctttccagctccatttgcat 644
Query: 181 tcttggctgactcccaataaatggcactgtccatgaagacgggacttttgtgataaagag 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tcttggctgactcccaatacatggcactgtccatgaagacgggacttttgtgataaagag 584
Query: 241 gtggctattcctgttgttctaagaggaggagtcaaggcctgtggtctacagcagttgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gtggctattcctgttgttctaagaggaggagtcaaggcctgtggtctacagcagttgaaa 524
Query: 301 aatggcagctcaacctcaggaacatgcaactcagagggagctccaccatcagtagcttcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aatggcagctcaacctcaggaacatgcaactcagagggagctccaccatcagtagcttcg 464
Query: 361 atagcctggaaaccggctgaaaacagtctcaaacaccccccaccccacgccc----ccgc 416
|||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct: 463 atagcctggaaaccggctgaaaacagtctcaaacactccccaccccacccccacccccgc 404
Query: 417 cccgaaagctcaaaggcacatcttaatgagacctgtgggtgggaaacatggggaggtcaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cccgaaagctcaaaggcacatcttaatgagacctgtgggtgggaaacatggggaggtcaa 344
Query: 477 ggccaccagagtggaaaagtctgggttccctatgtggaacatgaaaattgagcacctaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggccaccagagtggaaaagtctgggttccctatgtggaacatgaaaattgagcacctaca 284
Query: 537 gtgtcagatctagcacctcagggagggggtgtctaggttcaaggggggaatatagactcc 596
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgtcagatctagcacctcagggagcgggtgtctaggttcaaggggggaatatagactcc 224
Query: 597 taaatggacaagcaggctcataa 619
|||||||||||||||||||||||
Sbjct: 223 taaatggacaagcaggctcataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1023
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1013
Effective search space: 616917
Effective search space used: 616917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
