BAC Information

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BAC

Clone NameMSMg01-526L09
Chromosome4 (Build37)
Map Location 88,476,397 - 88,476,984
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6
Downstream geneIfna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526L09.T7 (MSMg01no526_l09.b1)MSMg01-526L09.TJ (MSMg01no526_l09.g1)
ACCAG596238AG596239
length734733
length of high quality
(start - end)		620 (38 - 657)588 (68 - 655)
definitionCHROMAT_FILE: MSMg01no526_l09.b1 PHD_FILE: MSMg01no526_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:43 2005CHROMAT_FILE: MSMg01no526_l09.g1 PHD_FILE: MSMg01no526_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAT
AAAATCATTAATTTATCTACACAATATTAGTTCATAAAAGTTCATCTTTA
TGTTGATCAGCAGGAAATTTACTAAATAGGATGCTTTGATGCCCAGGAAT
TGTTAGACTGTGTAATAGTGATAGGACAGGCATATAAATAGCAAGAAGCA
ATACTGGGGTGAAATCTTTCAGGGCCTTGCCTCTCAGAGCTCACTCATCA
TAAAACATGCAAAAACCAGTGGGCTGTGGGAAGCCACATATGCCATTACA
AGGTGGCGCTGGCTACCGCTGGCCACCACGCATAAGTTTGGGAAAACAAC
CAATGTGTACATATGCAGTAAAGTTTTTTGCCAAGTCACTGCCTGGCCCG
GGCATAATAATGAGGTTCTGTGAGGTACTGAGAGTATAACCAATCGGATG
TGAGACATGCAAATGAGGTATGATAATGAGGTTCTGTGAGGTTCTTAGAG
CATAACCAATCGGATGTAAGACATGCAAATGAGGTAGTAAATGCATAACC
AATCCAGGTGTGAGACACGCCTCTCCTAGGCCTATATAAGCAGCACCAGT
TCTGGGCTCATGGTCTTTTCGCCTCTGCAATCAAGCTCTCCCAATTAACA
TGTGCAGAAAGATCCTGTTGTGTTGTCATTCTTGCTGGCAAGTTGGGCGC
TCATAGTGGGCCATCTCAAGGAAACTCATCCACT

GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAGCTCAGAGTTGGTTGTCTCAATTTCACAGA
GCATTACCTACTGATCAAAATGATGTGAGTTTGGCTGTGAATCCTTACTA
GAGGGATCGCACACAGGCACCTCCTTCTCGAGATCACTTCGGTTATAGGA
GGATAGAGGGAAAGGACACAAAAGACCTTGTTATGCATAATTATCTGTCC
ATTGTCCAGAAGATATGACCTGGGGAACCGAGAGAGTTTCCCTTCCGAAG
ATGAGTTTGAAGGGAATGAAGTCTTCCTGAAGTCAGCTTATCTGGGGAAA
GTGTATTTTAGTTTGGAGGAAAGTGCCAGGAAATAGAATTCATGAGGAAC
TTTCCTGTTTGTTCTTTGCAGGCCTGGCCAGTAGGTGGCTCTCTTCGTCT
CTAAATTTTTCTCATGATTGAAGATTTGGTTTCCTTTTCCTTTCTTTTTT
TCTTTTTTTTTAACTTTCTTCTTTTCCCCCCACTCCTACCTCCCTCCGTC
CCTCCCTCCCTTCCTTACTTCCTTTTTTTTCTTTCCTTCATCTTCTTTTT
CTTTTCTGACTTTCTCCTTTATTCCCTTGTTTTTCTTTTCCTTTGATGAA
ATAATCAGTATTAGGTCATTAGAAGAATGTTTTCTAAAGTCTAAAATTAA
GAGGAAATTCTCATATATGAAAGTTTCATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_l09.g1 MSMg01no526_l09.g1 CHROMAT_FILE:
MSMg01no526_l09.g1 PHD_FILE: MSMg01no526_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:43 2005
         (588 letters)



>mm_chr4_88476373_88477360
          Length = 988

 Score = 1137 bits (588), Expect = 0.0
 Identities = 588/588 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagctcagagttggttgtctcaatttcacagagcattacctactgatcaaaatgatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctagctcagagttggttgtctcaatttcacagagcattacctactgatcaaaatgatgtg 553

                                                                       
Query: 61  agtttggctgtgaatccttactagagggatcgcacacaggcacctccttctcgagatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agtttggctgtgaatccttactagagggatcgcacacaggcacctccttctcgagatcac 493

                                                                       
Query: 121 ttcggttataggaggatagagggaaaggacacaaaagaccttgttatgcataattatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttcggttataggaggatagagggaaaggacacaaaagaccttgttatgcataattatctg 433

                                                                       
Query: 181 tccattgtccagaagatatgacctggggaaccgagagagtttcccttccgaagatgagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tccattgtccagaagatatgacctggggaaccgagagagtttcccttccgaagatgagtt 373

                                                                       
Query: 241 tgaagggaatgaagtcttcctgaagtcagcttatctggggaaagtgtattttagtttgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgaagggaatgaagtcttcctgaagtcagcttatctggggaaagtgtattttagtttgga 313

                                                                       
Query: 301 ggaaagtgccaggaaatagaattcatgaggaactttcctgtttgttctttgcaggcctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggaaagtgccaggaaatagaattcatgaggaactttcctgtttgttctttgcaggcctgg 253

                                                                       
Query: 361 ccagtaggtggctctcttcgtctctaaatttttctcatgattgaagatttggtttccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccagtaggtggctctcttcgtctctaaatttttctcatgattgaagatttggtttccttt 193

                                                                       
Query: 421 tcctttctttttttctttttttttaactttcttcttttccccccactcctacctccctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tcctttctttttttctttttttttaactttcttcttttccccccactcctacctccctcc 133

                                                                       
Query: 481 gtccctccctcccttccttacttccttttttttctttccttcatcttctttttcttttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gtccctccctcccttccttacttccttttttttctttccttcatcttctttttcttttct 73

                                                           
Query: 541 gactttctcctttattcccttgtttttcttttcctttgatgaaataat 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  gactttctcctttattcccttgtttttcttttcctttgatgaaataat 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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