XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAGAGC
ATGGTCACATGTCACATCTGCAAAACCTCATTTGATCGCCTGAGGCAGCT
ATCACCTGATTTTCTTGTAATTACCTCCTTATGTCAGTTGCTTCCATCTC
TGGTGACAATTTTTTATTCCATTCTATATCCCAAACTCCTAAGAGAGTTC
TTAAAGTAAATACATACCTAATAAATATTTATCAACTTGAATGAATAAAT
TAAAAATTCTAGGCTGGTTTCAGCTGAATAAACGAGAAAGGTTCATGATT
TAATTACAGTTTACGTTGCCAGGGAAAACGGTGATCATTCTGAACTCCAC
TTCCCTCCATAATAAGGTCTATTGCAACAGTTAATTGCATGGCAAAAGCA
TTCAGTAGCCTGAATCCATGCATTGGAATTTTATGCAAAGCAGCCTAAAA
AAATTCTGACTTTCAGCAAAACTATGATTTTTAATTGTTTCATTTTTGAA
ATCTTATGCCTACACTTTCTAACAATAAAATGATATCAGATTCACTTAAA
ATATAAAGTAAACATAAGGATTATATATGTTGGGCTCAGAGAGAGCTCAG
AGGTTAAGGGCACTGGCTGCTCTTCCAAAGAACCCCGAGTTAGATTCCCA
GCAACCACGTGGTGGTTCATAAACATCTATAATGGGATCCGATGCCTCCT
TCTGGATGCAGATGTACATGCAGGCAGAACTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCATAGGCTCTGGATGATGGGGCCAGTTGCTCCTA
CTGGGGCATTTGAAGAATCTAGGAGGCACCAGGCAGAGAATTGTCCTATT
TAAACATCTGTTCTGCACAGAGTGCATAATCAACTTGAATGGGCAAAATA
AAAACTTCATGATCCTCGGATGATTAATTCATGCATCAACATAACTATGT
CCAGAAATTTGGTCTAACACCAGTTTAGTTATAGCTGAATTATTTAGAAT
GAAATAAGCATTCAAGTTAACTGACTTTTAATAAAGCATTGCCTTCTGGA
ATGTGTGTGAGCCTAATGAAGTCAGTTGAAGACCTTAAGACAAAATCATT
CAGGTTTTTTGCAAAAAACAGAAAAATCTCCTCCTTATTGTTTTTGTTCT
GAAACTGCCTTTGTTCTTCCCTGGTCCATCAGCCCTTTAAACCACAACAA
CCAATTCTTACAATAAATTTCATCTGTGTGTATGCACACAACCTATAGAC
CCTGCTTCTCGAGGAACCCTAACTAGCACACATATTTATCATGTGTCCTT
TCCTATCTAATTATAAACAGATTAAACACCCCCAGAAGCAGTGAGATCCA
GAAGAAATGGAAGTGTTGGAAATTCTCTGCTGTAAGGGTTTGGATCAAAA
TATTTGGAATACTTAGTCCTCAGAGAGN

Query= MSMg01no526_m06.b1 MSMg01no526_m06.b1 CHROMAT_FILE:
MSMg01no526_m06.b1 PHD_FILE: MSMg01no526_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:47 2005
         (527 letters)



>mm_chr4_52166065_52166991
          Length = 927

 Score =  996 bits (515), Expect = 0.0
 Identities = 521/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagagcatggtcacatgtcacatctgcaaaacctcatttgatcgcctgaggca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaattcacagagcaaggtcacatgtcacatctgcaaaacctcatttgatcgcctgaggca 668

                                                                       
Query: 65  gctatcacctgattttcttgtaattacctccttatgtcagttgcttccatctctggtgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gctatcacctgattttcttgtaattacctccttatgtcagttgcttccatctctggtgac 608

                                                                       
Query: 125 aattttttattccattctatatcccaaactcctaagagagttcttaaagtaaatacatac 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aactttttattccattctatatcccaaactcctaagagagttcttaaagtaaatacatac 548

                                                                       
Query: 185 ctaataaatatttatcaacttgaatgaataaattaaaaattctaggctggtttcagctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctaataaatatttatcaacttgaatgaataaattaaaaattctaggctggtttcagctga 488

                                                                       
Query: 245 ataaacgagaaaggttcatgatttaattacagtttacgttgccagggaaaacggtgatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ataaacgagaaaggttcatgatttaattacagtttacgttgccagggaaaacggtgatca 428

                                                                       
Query: 305 ttctgaactccacttccctccataataaggtctattgcaacagttaattgcatggcaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttctgaactccacttccctccataataaggtctattgcaacagttaattgcatggcaaaa 368

                                                                       
Query: 365 gcattcagtagcctgaatccatgcattggaattttatgcaaagcagcctaaaaaaattct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gcattcagtagcctgaatccatgcattggaattttatgcaaagcagcctaaaaaaattct 308

                                                                       
Query: 425 gactttcagcaaaactatgatttttaattgtttcatttttgaaatcttatgcctacactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gactttcagcaaaactatgatttttaattgtttcatttttgaaatcttatgcctacactt 248

                                                      
Query: 485 tctaacaataaaatgatatcagattcacttaaaatataaagta 527
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctaacaataaaatgatatcagattcacttaaaatataaagta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)