BAC Information

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BAC

Clone NameMSMg01-526P01
Chromosome4 (Build37)
Map Location 83,001,525 - 83,046,258
singlet/doubletdoublet
Overlap genenone
Upstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik
Downstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526P01.T7 (MSMg01no526_p01.b1)MSMg01-526P01.TJ (MSMg01no526_p01.g1)
ACCAG596411AG596412
length734725
length of high quality
(start - end)		688 (37 - 724)465 (68 - 532)
definitionCHROMAT_FILE: MSMg01no526_p01.b1 PHD_FILE: MSMg01no526_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:01 2005CHROMAT_FILE: MSMg01no526_p01.g1 PHD_FILE: MSMg01no526_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,001,525 - 83,002,208)(83,045,794 - 83,046,258)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
TTGTAGAATAGTATATATAAGTGCTTTGTACATTTTACCTGTTATCATAA
TTCTTACTAGAATTATGTTCTAAAACTATGAGCTTACGTCAGGCATGGGA
ACACAGGCATATAATTCCAGATACTTGGGAGGCCAATGAAGGTCAAGAGC
AGGAGTTTGAAACCAGGTAAAACAAAGTAACAAGACTCTATGCCCAAAAT
AAAAAGTAAAATAAGAGAAAAAGCACATTTAGGACCAGCAAGAGTCTTCT
GTGAGGAACAACAACAAGCCTAATGAACTGAGTTCGATTCCCAGGTTCCA
CATAGTGGAAGGAAAGAATCATTTGCCACAAGTTGTTCTCTGATCTCCTG
GAGCCCAAGCAAAGACACACAATCAATCAGTCAATCAACCAACCAATCAA
TCAAGAGTAAACATAAAAAAGCTTGTTTCTCTGTTAGACCAAACGCATGC
ATGTACTCTTGAGGTACATGGAAAACTTTATTTCCTTGTCACCTTCCATT
TAAGCGAGATTCTGATGAGTCCTTTCCTTCCATAGATGACCAAGGGGTCC
ATGTGTTCCGGATGATGTTTCTACAAGACAATGGAAGACATGAGTCTCTG
AGTGATCATTGAGCAGAGGCCCATACTAAGTTGCAATAGGCAGGTGTAAA
CGACTCAAATTCTAAAATTGTCTTAGAAAAACAN

ATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACCCAGCAGGTAGAAAGCCTGACTCCAGCTTC
CTCCTCTCTTCTGAGCAGTACTTCTTTTACAGCCTGAATAACGAAATAGA
TAGCTATATGCATAATGACTCTATTTTTTAAATTGCCCTAAAATATCTCC
ACAGTTACTTGTTCTCCTACCACAGACATCTCAGTTCCATGGCTATATAT
ATATATAGGAATTTGTCAAGAATTGTGCCCAATTTATTATAAGATATTGA
GATTTTAGATTAGCAGGGACAGGGAGAAAATATGCTTAAAAATTCAAAAT
CAGAGAAAAAAATCAGAAAATATTCTACCTCTACTAAGAAATAAGGATAT
TGGATATGTTGTCTGTGTGTGTGTAGCGGGGAGGATATGGGAAAAGATGC
AGTATTTTGCCGAAAGGCTTGAACTAAAATGTCTGAGTTCCATGACAAGC
TAGCTTATAGTTTTTTGTTTGCTTGCTTGCTTGTTTGTTTGTTTGGTTGT
TTTTGGAGATAGGGCCTCTCTGTGTCCTAGTTGGCCTAGAACTTCCTCTT
TAGGACAGATTGGCCTTGAACTCACAGTGATCTGCTTGATTCTGCCTCCT
TAATGTTGGGATTAAAGGTGTGCTTACACTACTGGCTGGCTTATTTTAAT
ATTGGAAACGGGTTTGTTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_p01.b1 MSMg01no526_p01.b1 CHROMAT_FILE:
MSMg01no526_p01.b1 PHD_FILE: MSMg01no526_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:01 2005
         (688 letters)



>mm_chr4_83001321_83002408
          Length = 1088

 Score = 1199 bits (620), Expect = 0.0
 Identities = 668/684 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctttgtagaatagtatatataagtgctttgtacattttacctgttatcataa 64
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctcctttgcagaatagtatatataagtgctttgtacattttacctgtcatcataa 264

                                                                       
Query: 65  ttcttactagaattatgttctaaaactatgagcttacgtcaggcatgggaacacaggcat 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcttactagaactatgttctaaaactatgagcttacgtcaggcatgggaacacaggcat 324

                                                                       
Query: 125 ataattccagatacttgggaggccaatgaaggtcaagagcaggagtttgaaaccaggtaa 184
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaattccagctacttgggaggccaatgaaggtcaagagcaggagtttgaaaccaggtaa 384

                                                                       
Query: 185 aacaaagtaacaagactctatgcccaaaataaaaagtaaaataagagaaaaagcacattt 244
           | ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 agcaaagtaacaagactctgtgcccaaaataaaaagtaaaataaaagaaaaagcacattt 444

                                                                       
Query: 245 aggaccagcaagagtcttctgtgaggaacaacaacaagcctaatgaactgagttcgattc 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaccagcaagagtcttctgtggggaacaacaacaagcctaatgaactgagttcgattc 504

                                                                       
Query: 305 ccaggttccacatagtggaaggaaagaatcatttgccacaagttgttctctgatctcctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaggttccacatagtggaaggaaagaatcatttgccacaagttgttctctgatctcctg 564

                                                                       
Query: 365 gagcccaagcaaagacacacaatcaatcagtcaatcaaccaaccaatcaatcaagagtaa 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagcccaagcatagacacacaatcaatcagtcaatcaaccaaccaatcaatcaagagtaa 624

                                                                       
Query: 425 acataaaaaagcttgtttctctgttagaccaaacgcatgcatgtactcttgaggtacatg 484
           |||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct: 625 acataaaacagcttgtttctctgttagaccaaatgcatggatgtacccttgaggtacatg 684

                                                                       
Query: 485 gaaaactttatttccttgtcaccttccatttaagcgagattctgatgagtcctttccttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 685 gaaaactttatttccttgtcaccttccatttaagcgagattctgatgagtccttttcttc 744

                                                                       
Query: 545 catagatgaccaaggggtccatgtgttccggatgatgtttctacaagacaatggaagaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catagatgaccaaggggtccatgtgttccggatgatgtttctacaagacaatggaagaca 804

                                                                       
Query: 605 tgagtctctgagtgatcattgagcagaggcccatactaagttgcaataggcaggtgtaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgagtctctgagtgatcattgagcagaggcccatactaagttgcaataggcaggtgtaaa 864

                                   
Query: 665 cgactcaaattctaaaattgtctt 688
            |||||||||||||||||||||||
Sbjct: 865 tgactcaaattctaaaattgtctt 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_p01.g1 MSMg01no526_p01.g1 CHROMAT_FILE:
MSMg01no526_p01.g1 PHD_FILE: MSMg01no526_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:01 2005
         (465 letters)



>mm_chr4_83045594_83046458
          Length = 865

 Score =  876 bits (453), Expect = 0.0
 Identities = 462/465 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacccagcaggtagaaagcctgactccagcttcctcctctcttctgagcagtacttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 665 tacccagcaggtagaaagcctgactccagcttcctcctctcttttgagcagtacttcttt 606

                                                                       
Query: 61  tacagcctgaataacgaaatagatagctatatgcataatgactctattttttaaattgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tacagcctgaataacgaaatagatagctatatgcataatgactctattttttaaattgcc 546

                                                                       
Query: 121 ctaaaatatctccacagttacttgttctcctaccacagacatctcagttccatggctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctaaaatatctccacagttacttgttctcctaccacagacatctcagttccatggctata 486

                                                                       
Query: 181 tatatatataggaatttgtcaagaattgtgcccaatttattataagatattgagatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tatatatataggaatttgtcaagaattgtgcccaatttattataagatattgagatttta 426

                                                                       
Query: 241 gattagcagggacagggagaaaatatgcttaaaaattcaaaatcagagaaaaaaatcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gattagcagggacagggagaaaatatgcttaaaaattcaaaatcagagaaaaaaatcaga 366

                                                                       
Query: 301 aaatattctacctctactaagaaataaggatattggatatgttgtctgtgtgtgtgtagc 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaatattctacttctactaagaaataaggatattggatatgttgtctgtgtgtgtgtagc 306

                                                                       
Query: 361 ggggaggatatgggaaaagatgcagtattttgccgaaaggcttgaactaaaatgtctgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggggaggatatgggaaaagatgcagtattttgccgaaaggcttgaactaaaatgtctgag 246

                                                        
Query: 421 ttccatgacaagctagcttatagttttttgtttgcttgcttgctt 465
           ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 245 ttccatgacaagctagcttatggttttttgtttgcttgcttgctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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