Query= MSMg01no527_b20.b1 MSMg01no527_b20.b1 CHROMAT_FILE:
MSMg01no527_b20.b1 PHD_FILE: MSMg01no527_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:15 2005
(630 letters)
>mm_chr4_26661064_26662095
Length = 1032
Score = 1195 bits (618), Expect = 0.0
Identities = 625/628 (99%), Gaps = 2/628 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcaagagctgtatcttggggtacttacagtaaataaagtactgtctactgggt 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 832 gaattcatcaagagctgtatcttggggtacttacagtaaataaagtactgtctattgggt 773
Query: 65 aagaattcagagtggtacattactaagtttaccatatggtcaaattctcagcataattac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aagaattcagagtggtacattactaagtttaccatatggtcaaattctcagcataattac 713
Query: 125 attaacacacaaggttagacaaatgttcagttccaacatactagcttattttcacctggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 attaacacacaaggttagacaaatgttcagttccaacatactagcttattttcacctggt 653
Query: 185 tttgattctacagcatcaatactttggtaaatattatcaacctatacactctaaagctaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tttgattctacagcatcaatactttggtaaatattatcaacctatacactctaaagctaa 593
Query: 245 tttaaaaaccttctggaagctgaattgttggagggaatgaagtagtaaattataaaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tttaaaaaccttctggaagctgaattgttggagggaatgaagtagtaaattataaaaaaa 533
Query: 305 ttcatgtaatccttttattaaagtttgaaattaaaataggataatgtattcaaaaagtat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttcatgtaatccttttattaaagtttgaaattaaaataggataatgtattcaaaaagtat 473
Query: 365 gattcaaaggtgagcataaggcaccttcaggaaataatatttaaaaatatgccaaaccca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gattcaaaggtgagcataaggcaccttcaggaaataatatttaaaaatatgccaaaccca 413
Query: 425 tgatttctaggaaacaaacaaaaaaaa--tagagaattcttagcaaatgtgattaattca 482
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 412 tgatttctaggaaacaaacaaaaaaaaaatagagaattcttagcaaatgtgattaattca 353
Query: 483 aaagtggtcctaaataacattaccaaactaaatagaataaggaatgaactctgcttgctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaagtggtcctaaataacattaccaaactaaatagaataaggaatgaactctgcttgctg 293
Query: 543 acacccagttgctattaactgtgaattaaactgaattgccctcagtcagattctggataa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acacccagttgctattaactgtgaattaaactgaattgccctcagtcagattctggataa 233
Query: 603 gagaaaggacagaagcaagacaaaatta 630
||||||||||||||||||||||||||||
Sbjct: 232 gagaaaggacagaagcaagacaaaatta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1032
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1022
Effective search space: 633640
Effective search space used: 633640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_b20.g1 MSMg01no527_b20.g1 CHROMAT_FILE:
MSMg01no527_b20.g1 PHD_FILE: MSMg01no527_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:15 2005
(612 letters)
>mm_chr4_26512926_26513937
Length = 1012
Score = 1133 bits (586), Expect = 0.0
Identities = 608/620 (98%), Gaps = 8/620 (1%)
Strand = Plus / Plus
Query: 1 ctttacttgataagcctctgtctattaacacatttatatatatatatatatatatatata 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 193 ctttacttgataagcctctgtctattaacacatttaaatatatatatatatatatatata 252
Query: 61 tatatattttttttt--------ccaaatgaaacaagtctggcacagaaggcagctcctg 112
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 253 tatatattttttttttttttttcccaaatgaaacaagtctggcacagaaggcagctcctg 312
Query: 113 cttcttacttctaagcttgctctttccactgtctttcctatttgaattgtgacaatttca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cttcttacttctaagcttgctctttccactgtctttcctatttgaattgtgacaatttca 372
Query: 173 aaacatccagggtagtcttcatgtaatactttttctttctctcatatccaatatttaatt 232
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 373 aaacatccagggtagttttcatgtaatattttttctttctctcatatccaatatttaatt 432
Query: 233 tattatataagttttgatgtacctaaacttcaaaatatatgtagaacatgactgtaatag 292
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tattaaataagttttgatgtacctaaacttcaaaatatatgtagaacatgactgtaatag 492
Query: 293 cttaaccctggcattttggaatgaaagctttgttttgtttagttaaccctcaagtgtcat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttaaccctggcattttggaatgaaagctttgttttgtttagttaaccctcaagtgtcat 552
Query: 353 atgttattaagcccatggttttttggacttttaatctgggctgtttgttatctatttttt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atgttattaagcccatggttttttggacttttaatctgggctgtttgttatctatttttt 612
Query: 413 ggtggatcttgaaatgtctacatcagctactaaaaactctttatttatgtattttgtcat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggtggatcttgaaatgtctacatcagctactaaaaactctttatttatgtattttgtcat 672
Query: 473 gatttgagcatccattttctgtttgcataagctttctgttgtaattctagtggttccctc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gatttgagcatccattttctgtttgcataagctttctgttgtaattctagtggttccctc 732
Query: 533 tgtctcagccttttagggccctgttaacattagtcacacactgggcttgggtattttaca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgtctcagccttttagggccctgttaacattagtcacacactgggcttgggtattttaca 792
Query: 593 tttgtaatcttcacatctaa 612
||||||||||||||||||||
Sbjct: 793 tttgtaatcttcacatctaa 812
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 38 atatatatatatatatatatatatatatattt 69
||||||||||||||||||||||||||||||||
Sbjct: 259 atatatatatatatatatatatatatatattt 228
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 36 atatatatatatatatatatatatatatat 65
||||||||||||||||||||||||||||||
Sbjct: 259 atatatatatatatatatatatatatatat 230
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 35 tatatatatatatatatatatatatatat 63
|||||||||||||||||||||||||||||
Sbjct: 258 tatatatatatatatatatatatatatat 230
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
