BAC Information

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BAC

Clone NameMSMg01-527E12
Chromosome4 (Build37)
Map Location 137,018,220 - 137,186,697
singlet/doubletdoublet
Overlap geneHspg2, Ldlrad2, Usp48
Upstream geneLOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik
Downstream geneRap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527E12.T7 (MSMg01no527_e12.b1)MSMg01-527E12.TJ (MSMg01no527_e12.g1)
ACCAG596672AG596673
length762767
length of high quality
(start - end)		687 (50 - 736)655 (81 - 735)
definitionCHROMAT_FILE: MSMg01no527_e12.b1 PHD_FILE: MSMg01no527_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:28 2005CHROMAT_FILE: MSMg01no527_e12.g1 PHD_FILE: MSMg01no527_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,018,220 - 137,018,903)(137,186,043 - 137,186,697)
sequence
ATATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNCG
CGGAATTCCAGTCTGCCTAAAGCGGTTTGGGGGATGGGAGCCGTGGTGAT
GGGATTGAACCGATAAAGAGCGTTTTATGGTCAGCTCAGCAGCCGGATTC
TGGAGTGGCATTCATAAACCACAGCCTAAACAACACATGCCCTGTGAGGT
GTTACAAGTTTCCCCCACAAAAACAGGTGGGGCCTGTTCACACACGTGTC
GAGGAAGGACAGATTAAATAGGTCAACAACTCACTTAAGACTTGTGTAAA
TACTTTCCCTGTGTCAGCATCCCGGGAGCTGGTCACCATGTGGGAAAGAA
TGCAGGCCTTCCAGGTAGGTGAGATGGCTCAGCCTGCCACCACCAAACCT
GACAACCATCTCTGGGGCCCAAGTGGTGGAAGAAGAAAACTGAGTCCTGA
AAGTTGTCCTTTGACCTCCACATGTGTGCCACGCCTCCACAATAAAAATG
TAATAATAAAAAATAACATCTGGGGCTGGTGAGATGGCTCGTGGGTAAGA
GCACCAGACTGCTCTTCCTAAGGTCCGGAGTTCAAATCCCAGCAACCACA
TGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCTGGAGTG
TCTGAAGACAGCTACAGTATACTTACATATAACCAATAAATAAATCTTTA
AAAAAAAAAAACATCTGGAAGGGCTTTTTTTTCCTCTGAACCCCTTTCCC
GTGGGGTATCTG

TTTCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGATCCAAGGTTCCCT
TCTAGCATAAACAATGATGCTCACATGTAGTGCACATCCAGGCAAAACAC
CCATACACATTAAACACAAAACACAGCACTTGATAAAAATCAGAAAGGAT
AATTCTAGTCAACCCTTCCAATAGAGTTAGCACCACTGCCAGCTCAGCAG
CACACACCACAACCTCGAGGTGCTCCTCCCCCACCGAGCTCAAGTTCCAG
CCACCAAAATGGACCCTTTAAAACTCAATTTTTCTCAGTGGTCAATCAAT
ATCATTTGTTCCTCTTCTTTGTCTCAATCATGTAGCCATGACTGACCTGA
ATACTCTATATGAAGACTACAAAGAAGAACTGGCATCTACAAAACACTTA
AAGCTTCGAGGGGGTCATCAGGGAAATAGCTCACTTCATCAAGGATTTGC
TGACTAAGCTGTTCCCAGAGCCTATGTAAAACAGAGCCTGGGAGTGATGT
CACACACTGCAACCACAGCACAGGGGACGCAGAGATCTGCTTGAACTAGC
TAGCCAGACAGCCTAGCACAACAGTAAAGACTTTTAAAAAAAGAGAAAGC
ATCTCTATTAAAAAAAAAAGATTTATTTATTATTGTACATAAGTACACTG
TAGCTGACTTCAGATGCACAGAAGAGGGGATCAGATCCCATTACAGGTGG
TTGTGAGCCACCATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_e12.b1 MSMg01no527_e12.b1 CHROMAT_FILE:
MSMg01no527_e12.b1 PHD_FILE: MSMg01no527_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:28 2005
         (687 letters)



>mm_chr4_137018017_137019103
          Length = 1087

 Score = 1307 bits (676), Expect = 0.0
 Identities = 682/684 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccagtctgcctaaagcggtttgggggatgggagccgtggtgatgggattgaaccg 63
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccagcctgactaaagcggtttgggggatgggagccgtggtgatgggattgaaccg 263

                                                                       
Query: 64  ataaagagcgttttatggtcagctcagcagccggattctggagtggcattcataaaccac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataaagagcgttttatggtcagctcagcagccggattctggagtggcattcataaaccac 323

                                                                       
Query: 124 agcctaaacaacacatgccctgtgaggtgttacaagtttcccccacaaaaacaggtgggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcctaaacaacacatgccctgtgaggtgttacaagtttcccccacaaaaacaggtgggg 383

                                                                       
Query: 184 cctgttcacacacgtgtcgaggaaggacagattaaataggtcaacaactcacttaagact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgttcacacacgtgtcgaggaaggacagattaaataggtcaacaactcacttaagact 443

                                                                       
Query: 244 tgtgtaaatactttccctgtgtcagcatcccgggagctggtcaccatgtgggaaagaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtgtaaatactttccctgtgtcagcatcccgggagctggtcaccatgtgggaaagaatg 503

                                                                       
Query: 304 caggccttccaggtaggtgagatggctcagcctgccaccaccaaacctgacaaccatctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caggccttccaggtaggtgagatggctcagcctgccaccaccaaacctgacaaccatctc 563

                                                                       
Query: 364 tggggcccaagtggtggaagaagaaaactgagtcctgaaagttgtcctttgacctccaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggggcccaagtggtggaagaagaaaactgagtcctgaaagttgtcctttgacctccaca 623

                                                                       
Query: 424 tgtgtgccacgcctccacaataaaaatgtaataataaaaaataacatctggggctggtga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtgtgccacgcctccacaataaaaatgtaataataaaaaataacatctggggctggtga 683

                                                                       
Query: 484 gatggctcgtgggtaagagcaccagactgctcttcctaaggtccggagttcaaatcccag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatggctcgtgggtaagagcaccagactgctcttcctaaggtccggagttcaaatcccag 743

                                                                       
Query: 544 caaccacatggtggctcacaaccatccgtaacgagatctgactccctcttctggagtgtc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caaccacatggtggctcacaaccatccgtaacgagatctgactccctcttctggagtgtc 803

                                                                       
Query: 604 tgaagacagctacagtatacttacatataaccaataaataaatctttaaaaaaaaaaaac 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgaagacagctacagtatacttacatataaccaataaataaatctttaaaaaaaaaaaac 863

                                   
Query: 664 atctggaagggcttttttttcctc 687
           ||||||||||||||||||||||||
Sbjct: 864 atctggaagggcttttttttcctc 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_e12.g1 MSMg01no527_e12.g1 CHROMAT_FILE:
MSMg01no527_e12.g1 PHD_FILE: MSMg01no527_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:28 2005
         (655 letters)



>mm_chr4_137185977_137187031
          Length = 1055

 Score = 1266 bits (655), Expect = 0.0
 Identities = 655/655 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagatccaaggttcccttctagcataaacaatgatgctcacatgtagtgcacatcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cagaagatccaaggttcccttctagcataaacaatgatgctcacatgtagtgcacatcca 662

                                                                       
Query: 61  ggcaaaacacccatacacattaaacacaaaacacagcacttgataaaaatcagaaaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggcaaaacacccatacacattaaacacaaaacacagcacttgataaaaatcagaaaggat 602

                                                                       
Query: 121 aattctagtcaacccttccaatagagttagcaccactgccagctcagcagcacacaccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aattctagtcaacccttccaatagagttagcaccactgccagctcagcagcacacaccac 542

                                                                       
Query: 181 aacctcgaggtgctcctcccccaccgagctcaagttccagccaccaaaatggacccttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacctcgaggtgctcctcccccaccgagctcaagttccagccaccaaaatggacccttta 482

                                                                       
Query: 241 aaactcaatttttctcagtggtcaatcaatatcatttgttcctcttctttgtctcaatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaactcaatttttctcagtggtcaatcaatatcatttgttcctcttctttgtctcaatca 422

                                                                       
Query: 301 tgtagccatgactgacctgaatactctatatgaagactacaaagaagaactggcatctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtagccatgactgacctgaatactctatatgaagactacaaagaagaactggcatctac 362

                                                                       
Query: 361 aaaacacttaaagcttcgagggggtcatcagggaaatagctcacttcatcaaggatttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaacacttaaagcttcgagggggtcatcagggaaatagctcacttcatcaaggatttgc 302

                                                                       
Query: 421 tgactaagctgttcccagagcctatgtaaaacagagcctgggagtgatgtcacacactgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgactaagctgttcccagagcctatgtaaaacagagcctgggagtgatgtcacacactgc 242

                                                                       
Query: 481 aaccacagcacaggggacgcagagatctgcttgaactagctagccagacagcctagcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaccacagcacaggggacgcagagatctgcttgaactagctagccagacagcctagcaca 182

                                                                       
Query: 541 acagtaaagacttttaaaaaaagagaaagcatctctattaaaaaaaaaagatttatttat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acagtaaagacttttaaaaaaagagaaagcatctctattaaaaaaaaaagatttatttat 122

                                                                  
Query: 601 tattgtacataagtacactgtagctgacttcagatgcacagaagaggggatcaga 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tattgtacataagtacactgtagctgacttcagatgcacagaagaggggatcaga 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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