Query= MSMg01no527_m16.b1 MSMg01no527_m16.b1 CHROMAT_FILE:
MSMg01no527_m16.b1 PHD_FILE: MSMg01no527_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:11 2005
(664 letters)
>mm_chr4_118648971_118650034
Length = 1064
Score = 1120 bits (579), Expect = 0.0
Identities = 642/665 (96%), Gaps = 8/665 (1%)
Strand = Plus / Plus
Query: 4 ggaattctg--acactccagagtccagccaaagaaggaagcagaagacaggaccagaagt 61
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgatacagt--agagtccagccaaagaaggaagcagaagacaggaccagaagt 261
Query: 62 gaggaacaaccttagggagaaatatgtaccatcctaaattcctacgaattcagtatctag 121
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 262 gaggaacaaccttagggagaaatatgcaccatcctaaattcctacgaattcagtgtctag 321
Query: 122 aagaaacaggccagcaggcagactggacacaaaaaaaaagtgtcttcacccactggacat 181
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 322 aagaaacaggccagcaggcagactgggcac--aaaaaaagtgtcttcacccactggacat 379
Query: 182 agaaatgaggggccccaagaagcacagaatcagctgtgcacagagggaacaagaggaagg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaatgaggggccccaagaagcacagaatcagctgtgcacagagggaacaagaggaagg 439
Query: 242 gagaatgaacagcacaagactcaatcaattaggaa-gtggagtaaatgacttgggtacct 300
||||| |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 440 gagaacgaacagcacaagactcgatcaattaggaacgtggagtaattgacttgggtacct 499
Query: 301 gtatggaaactcaggaatagcagagggacacagggacacagaccttccatgtgaaagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 gtatggaaactcaggaatagcagagggacacagggacacagaccttccatgtgaaagtct 559
Query: 361 taacgacaaacaatggaaataaaatctgagttagtcagagagaaacttgggtaaggtcat 420
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taatgacaaagaatggaaataaaatctgagttagtcagagagaaacttgggtaaggtcat 619
Query: 421 caaaaagcttgcaaaatcaataggaaggcccaaaaatgagttgtcacagtaggccgaaac 480
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 caagaagcttgcaaaatcaataggaaggcccaaaaatgagttgtcaaagtaggccgaaac 679
Query: 481 caaagtagacatgtagcaaactagaagagcaacctgaaagatggtaccatggccatcgag 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 caaagtagacatgtagcaaactagaagagcagcctgaaagatggtaccatggccatcgag 739
Query: 541 cactgggtgtggcaacttgctctatggaccagaagatgcttcccctgctagcacagctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cactgggtgtggcaacttgctctatggaccagaagatgcttcccctgctagcacagctgg 799
Query: 601 ttgtcaactgtctactctttttt-atttaggtcatttcctggatggaaacacataaatag 659
|||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 800 ttgtcaacagtctactctttttttatttaggtcatttcccggatggaaacacataaatag 859
Query: 660 ctaag 664
|||||
Sbjct: 860 ctaag 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_m16.g1 MSMg01no527_m16.g1 CHROMAT_FILE:
MSMg01no527_m16.g1 PHD_FILE: MSMg01no527_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:11 2005
(454 letters)
>mm_chr4_118724178_118725031
Length = 854
Score = 714 bits (369), Expect = 0.0
Identities = 432/471 (91%), Gaps = 29/471 (6%)
Strand = Plus / Minus
Query: 1 acccactgaggggtcttcctgatatctcacccttatgttcttgactcacacaaaaccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 acccactgaggggtcttcctgatatctcacccttatgttcttgactcacacaaaaccagc 756
Query: 61 ctctttctttcccaggattgtccttagggattgctcgcagagatggtgaccatccaccta 120
|||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 755 ctctctctttcccaagattgtccttagggaatgctcgcagagatggtgaccatccaccta 696
Query: 121 ttttagattgcagggacggaagtcacgccagtggtctggtcaatgtccttgtgtctattt 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 695 ttttagattgcagggacggaagtcatgccagtggtctggtcaatgtccttgtgtctattt 636
Query: 181 ctcctctatttgcataaccctcctacacacacacacacacacacatacacacacacacac 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 635 ctcctctatttgcataaccctcctacacacacacacacacacacacacacacacacacac 576
Query: 241 ----------------------gaaaagacttctatatatttgttggttgaatgatcaca 278
| |||||||| |||||||||||||||||||||||||||
Sbjct: 575 acacacacacacacacacacacggaaagacttatatatatttgttggttgaatgatcaca 516
Query: 279 actatgtttctccaggttaaatatttccacttccacctccaagccaccaccctccatttt 338
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 actatgtttccccaggttaaatatttccacttccacctccaagccaccaccctccatttt 456
Query: 339 ttttttttttttt-------gagcaactgtgccttttcagaaacgactggttggcataag 391
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 455 ttttttttttttttttttttgagcaactgtgccttttcagaaaggactggttggcataag 396
Query: 392 agaatgatgtatggatgcttacaagttgataaacagaggcattcctttttt 442
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 395 agaatgatgtatggatgcttacaagttaataaacagaggcattcctttttt 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
