Query= MSMg01no527_p12.b1 MSMg01no527_p12.b1 CHROMAT_FILE:
MSMg01no527_p12.b1 PHD_FILE: MSMg01no527_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:26 2005
(622 letters)
>mm_chr4_134233480_134234500
Length = 1021
Score = 1156 bits (598), Expect = 0.0
Identities = 613/618 (99%), Gaps = 1/618 (0%)
Strand = Plus / Plus
Query: 5 gaattcctggttcagtggaggaagggacccagccctgtgtgctgatttggattcattcct 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggggaagtggaggaagggacccagccctgtgtgctgatttggattcattcct 264
Query: 65 ctgtgaagctgccaccgggggaaggggacaggtaggcagggaagagtgacagtttgggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtgaagctgccaccgggggaaggggacaggtaggcagggaagagtgacagtttgggga 324
Query: 125 ttagtgtgatgacaattagccaagttctgctctgcttctcttcacaaagaaaacttccct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttagtgtgatgacaattagccaagttctgctctgcttctcttcacaaagaaaacttccct 384
Query: 185 ttcgccatgctcttagaacgccaagttgggaagaggcgtctccatggcaaccgcatacac 244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcgccatgctcttagaacgccacgttgggaagaggcgtctccatggcaaccgcatacac 444
Query: 245 atttagtgatgtgtcacaaaatttgtgtatgcacaaaagcacattaggagactttttttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttagtgatgtgtcacaaaatttgtgtatgcacaaaagcacattaggagactttttttt 504
Query: 305 tatttgaatgtggcaagagaaatagatttcataattgaatgctgccttcaagtagagttt 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 t-tttgaatgtggcaagagaaatagatttcataattgaatgctgccttcaagtagagttt 563
Query: 365 accatttgctcaaagccgggatgcttaatgtgccccctcacactctggctgtgactcaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 accatttgctcaaagccgggatgcttaatgtgccccctcacactctggctgtgactcaga 623
Query: 425 taagggctcatctctttgggagtcctgctgtccacaacggggcgtggacagatgggggca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taagggctcatctctttgggagtcctgctgtccacaacggggcgtggacagatgggggca 683
Query: 485 cagccaggggtcaagatggcttcagcagaccaggaaaagcagattcatctcccatctgac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagccaggggtcaagatggcttcagcagaccaggaaaagcagattcatctcccatctgac 743
Query: 545 cagagcctggggagagagaatgctggcagctcaagaggcaaaaatggcccagattctagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cagagcctggggagagagaatgctggcagctcaagaggcaaaaatggcccagattctagg 803
Query: 605 cctgcttctgactcctca 622
||||||||||||||||||
Sbjct: 804 cctgcttctgactcctca 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space: 618732
Effective search space used: 618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_p12.g1 MSMg01no527_p12.g1 CHROMAT_FILE:
MSMg01no527_p12.g1 PHD_FILE: MSMg01no527_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:26 2005
(554 letters)
>mm_chr4_134405267_134406220
Length = 954
Score = 998 bits (516), Expect = 0.0
Identities = 553/582 (95%), Gaps = 28/582 (4%)
Strand = Plus / Minus
Query: 1 tgtttgagggccaagatgctagggagtgttaatctgaggtattgtattaatgctgtatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgtttgagggccaagatgctagggagtgttaatctgaggtattgtattaatgctgtatat 689
Query: 61 atgcacatatatatacacacatatatacatatattacatagatatgcatatacatatata 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atgtacatatatatacacacatatatacatatattacatagatatgcatatacatatata 629
Query: 121 acgtgtatacatacatacagatatgcatatacattatatatacacacacactatctatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acgtgtatacatacatacagatatgcatatacattatatatacacacacactatctatat 569
Query: 181 ctatatctatatatatctatatatatagtgagtcccggattctggtgggttcttctgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctatatctatatatatctatatatatagtgagtcccggattctggtgggttcttctgctc 509
Query: 241 agacctggggaagtgcttctgggtcaccgccggctgccggctcttggtacaatgaggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agacctggggaagtgcttctgggtcaccgccggctgccggctcttggtacaatgaggaaa 449
Query: 301 gtcctcccccctccccaaagggtcggagcactaggaag---------------------- 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtcctcccccctccccaaagggtcggagcactaggaaggttgagaaccattgttttttgt 389
Query: 339 --gttttt---ttttttttttt-gagacagggtttctctgtatagccctggctgtcatgg 392
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttgtttttttgtttttttttttcgagacagggtttctctgtatagccctggctgtcatgg 329
Query: 393 aactcactctgtagaccaggctggccttgaattcagaaatctacctgcctttgcctacca 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aactcactctgtagaccaggctggccttgaattcagaaatctacctgcctttgcctacca 269
Query: 453 agtgctgggaataaaggcatgcaccaccactgcccggcttaaagatttatttattattat 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agtgctgggaataaaggcatgcaccaccactgcccggcttaaagatttatttattattat 209
Query: 513 atctaagtacactgtagctgtcttcagacagcaccagaagag 554
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atctaagtacactgtagctgtcttcagacagcaccagaagag 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
